Results 41 - 60 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26519 | 3' | -68.6 | NC_005357.1 | + | 6296 | 0.68 | 0.108484 |
Target: 5'- gCGCCGGGGCUuaucuccggUGCGuGCaagaCGcGGCGCg -3' miRNA: 3'- -GCGGUCCCGG---------ACGC-CGgcg-GC-CCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 14342 | 0.68 | 0.107628 |
Target: 5'- uGCC-GGGCCUGCuGGuUCGCgguguccuggaaggCGGGgGCa -3' miRNA: 3'- gCGGuCCCGGACG-CC-GGCG--------------GCCCgCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 4548 | 0.68 | 0.105656 |
Target: 5'- gGUCuuGGGCUUGaGGCCgaagucGCCGaGGCGCu -3' miRNA: 3'- gCGGu-CCCGGACgCCGG------CGGC-CCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 27422 | 0.68 | 0.105656 |
Target: 5'- gCGCCuGGcgcaccgcGCCcgGCGGCCGCaggcccuGGCGCu -3' miRNA: 3'- -GCGGuCC--------CGGa-CGCCGGCGgc-----CCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 17268 | 0.68 | 0.10482 |
Target: 5'- aGCCGGGGauaUUGCcguccacgaagccgGcGCCG-CGGGCGCg -3' miRNA: 3'- gCGGUCCCg--GACG--------------C-CGGCgGCCCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 30178 | 0.68 | 0.102896 |
Target: 5'- gCGCCAGucggugaaGGCCaUGaaguaGCCGCCGGGCu- -3' miRNA: 3'- -GCGGUC--------CCGG-ACgc---CGGCGGCCCGcg -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 29745 | 0.68 | 0.100205 |
Target: 5'- aCGCCGuagaacucGGCCU-CGGCUGCUGccaGGCGCg -3' miRNA: 3'- -GCGGUc-------CCGGAcGCCGGCGGC---CCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 19307 | 0.68 | 0.09758 |
Target: 5'- uGUCAGGaGCCguuaccGCuGUCGCCguGGGCGCc -3' miRNA: 3'- gCGGUCC-CGGa-----CGcCGGCGG--CCCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 34877 | 0.68 | 0.09758 |
Target: 5'- aGCCGGuGGCgCcGCGgaucgagcacGCCGCCGaGCGCa -3' miRNA: 3'- gCGGUC-CCG-GaCGC----------CGGCGGCcCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 28658 | 0.68 | 0.09502 |
Target: 5'- uGCCAgaucGGuGCCgGCGGCCucGCCagcgcGGCGCg -3' miRNA: 3'- gCGGU----CC-CGGaCGCCGG--CGGc----CCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 8296 | 0.68 | 0.09502 |
Target: 5'- uGCCGGGGCagUGCaGCCaGC-GGuGCGCg -3' miRNA: 3'- gCGGUCCCGg-ACGcCGG-CGgCC-CGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 40940 | 0.68 | 0.091787 |
Target: 5'- cCGaCCAGcacugcgauaccccGGCCUGCcaggaGGCCGCCGaccGCGCc -3' miRNA: 3'- -GC-GGUC--------------CCGGACG-----CCGGCGGCc--CGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 32615 | 0.68 | 0.091787 |
Target: 5'- gCGUCaAGGGCCgcgacgccGCGGUCGCUGuccugucgaaguucGGCGCc -3' miRNA: 3'- -GCGG-UCCCGGa-------CGCCGGCGGC--------------CCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 24022 | 0.69 | 0.09009 |
Target: 5'- aCGCCAccuucGCCgacGUGGCCGCCaccGGCGCc -3' miRNA: 3'- -GCGGUcc---CGGa--CGCCGGCGGc--CCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 13875 | 0.69 | 0.09009 |
Target: 5'- gCGCCGcgauGGCCgGCGGCCGCaaGGuCGUg -3' miRNA: 3'- -GCGGUc---CCGGaCGCCGGCGgcCC-GCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 671 | 0.69 | 0.087717 |
Target: 5'- aGCCAccaGGCCgccuacgGCGGCgccgGCCGGGcCGCc -3' miRNA: 3'- gCGGUc--CCGGa------CGCCGg---CGGCCC-GCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 2823 | 0.69 | 0.080949 |
Target: 5'- gGCCAGGuGCUcGCGGCCacGCgcaGcGGCGCc -3' miRNA: 3'- gCGGUCC-CGGaCGCCGG--CGg--C-CCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 29591 | 0.69 | 0.079657 |
Target: 5'- gCGcCCAGGcGC--GCGGUuugccaguuguccagCGCCGGGCGCu -3' miRNA: 3'- -GC-GGUCC-CGgaCGCCG---------------GCGGCCCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 432 | 0.69 | 0.076718 |
Target: 5'- gGCCGuaccuugucguuGGGCUgcugcGCGGCCaGCuugCGGGCGCu -3' miRNA: 3'- gCGGU------------CCCGGa----CGCCGG-CG---GCCCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 13156 | 0.69 | 0.076718 |
Target: 5'- gCGCCucgaugucGGCCagUGuCGGCCGCgcUGGGCGCc -3' miRNA: 3'- -GCGGuc------CCGG--AC-GCCGGCG--GCCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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