miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26519 3' -68.6 NC_005357.1 + 432 0.69 0.076718
Target:  5'- gGCCGuaccuugucguuGGGCUgcugcGCGGCCaGCuugCGGGCGCu -3'
miRNA:   3'- gCGGU------------CCCGGa----CGCCGG-CG---GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 671 0.69 0.087717
Target:  5'- aGCCAccaGGCCgccuacgGCGGCgccgGCCGGGcCGCc -3'
miRNA:   3'- gCGGUc--CCGGa------CGCCGg---CGGCCC-GCG- -5'
26519 3' -68.6 NC_005357.1 + 1036 0.67 0.1234
Target:  5'- gGCCAcGGCCgGCGGCagcauguCGCCGcgaaccGGCGUc -3'
miRNA:   3'- gCGGUcCCGGaCGCCG-------GCGGC------CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 1596 0.67 0.117095
Target:  5'- uGCCacacGGGGUCgaggGuCGGCCcuucguaGUCGGGCGUg -3'
miRNA:   3'- gCGG----UCCCGGa---C-GCCGG-------CGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 1707 0.73 0.037832
Target:  5'- uCGCCGuGGGCCgGCGuGCCGgCgaGGGCGUc -3'
miRNA:   3'- -GCGGU-CCCGGaCGC-CGGCgG--CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 1763 0.66 0.13732
Target:  5'- gGCC--GGCCUGCgccuGGCgCGUCGGGC-Cg -3'
miRNA:   3'- gCGGucCCGGACG----CCG-GCGGCCCGcG- -5'
26519 3' -68.6 NC_005357.1 + 2642 0.7 0.072503
Target:  5'- aGCCaccacuuugcggaAGGGCCaGCGGUCGCCcaGGUGUu -3'
miRNA:   3'- gCGG-------------UCCCGGaCGCCGGCGGc-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 2726 0.67 0.130358
Target:  5'- gGCCGGacgcuugagcgcGGCCcgGC-GCUGCuCGGGCGUg -3'
miRNA:   3'- gCGGUC------------CCGGa-CGcCGGCG-GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 2823 0.69 0.080949
Target:  5'- gGCCAGGuGCUcGCGGCCacGCgcaGcGGCGCc -3'
miRNA:   3'- gCGGUCC-CGGaCGCCGG--CGg--C-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 4339 0.67 0.120524
Target:  5'- uGCCAGccuugaugcuGGCCguUGC-GuuGCCGGuGCGCg -3'
miRNA:   3'- gCGGUC----------CCGG--ACGcCggCGGCC-CGCG- -5'
26519 3' -68.6 NC_005357.1 + 4548 0.68 0.105656
Target:  5'- gGUCuuGGGCUUGaGGCCgaagucGCCGaGGCGCu -3'
miRNA:   3'- gCGGu-CCCGGACgCCGG------CGGC-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 5770 0.66 0.148405
Target:  5'- gCGCCAGGGCCUugaccaucGUGucCCGCCaucgcGGCaGCg -3'
miRNA:   3'- -GCGGUCCCGGA--------CGCc-GGCGGc----CCG-CG- -5'
26519 3' -68.6 NC_005357.1 + 5898 0.67 0.117403
Target:  5'- uCGCCAGcguGGUgaGUGuGCCGCCGGGa-- -3'
miRNA:   3'- -GCGGUC---CCGgaCGC-CGGCGGCCCgcg -5'
26519 3' -68.6 NC_005357.1 + 6238 0.75 0.02503
Target:  5'- gGCCAGGGCCUGCa--CGCCGguaacGGUGCg -3'
miRNA:   3'- gCGGUCCCGGACGccgGCGGC-----CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 6296 0.68 0.108484
Target:  5'- gCGCCGGGGCUuaucuccggUGCGuGCaagaCGcGGCGCg -3'
miRNA:   3'- -GCGGUCCCGG---------ACGC-CGgcg-GC-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 6366 0.83 0.006221
Target:  5'- gGCCGGGGCgCUGgguuacaccagguCGGCCGCCGcGGCGCc -3'
miRNA:   3'- gCGGUCCCG-GAC-------------GCCGGCGGC-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 6591 0.7 0.063517
Target:  5'- gGCCAgGGGgCUGCGGUCuuuGUcgaugaccagCGGGCGCg -3'
miRNA:   3'- gCGGU-CCCgGACGCCGG---CG----------GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 7142 0.7 0.068882
Target:  5'- aGUCGucGgCUGCGGCCuggaugaccaggGCCGGGCGCu -3'
miRNA:   3'- gCGGUccCgGACGCCGG------------CGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 7599 0.67 0.121795
Target:  5'- gGUCAGGGUCUGUccguCUGCCguggugauggucaggGGGCGCg -3'
miRNA:   3'- gCGGUCCCGGACGcc--GGCGG---------------CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 8128 0.66 0.140928
Target:  5'- gGCCGgcguugguuguGGGCgUGCGGgUGUCGG-CGCu -3'
miRNA:   3'- gCGGU-----------CCCGgACGCCgGCGGCCcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.