miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26519 3' -68.6 NC_005357.1 + 8296 0.68 0.09502
Target:  5'- uGCCGGGGCagUGCaGCCaGC-GGuGCGCg -3'
miRNA:   3'- gCGGUCCCGg-ACGcCGG-CGgCC-CGCG- -5'
26519 3' -68.6 NC_005357.1 + 8414 0.66 0.156241
Target:  5'- gGCCAGGGCCgUGCgcuugucuacGGCCuugaggcuuugGCCcuuGCGCa -3'
miRNA:   3'- gCGGUCCCGG-ACG----------CCGG-----------CGGcc-CGCG- -5'
26519 3' -68.6 NC_005357.1 + 8852 0.73 0.037729
Target:  5'- gGCCAGcgcguuGGCCU-CGGUCGCCacgaagcGGGCGCg -3'
miRNA:   3'- gCGGUC------CCGGAcGCCGGCGG-------CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 9214 0.66 0.144622
Target:  5'- aGCCAGcgguGGCCgugccgcgauagccaGCGGUgGCCgugccgaGGGCGCc -3'
miRNA:   3'- gCGGUC----CCGGa--------------CGCCGgCGG-------CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 9458 0.72 0.047096
Target:  5'- aCGCCgAGGGCCUGauaGGCaGCgaauucuuCGGGCGUc -3'
miRNA:   3'- -GCGG-UCCCGGACg--CCGgCG--------GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 10067 0.73 0.040964
Target:  5'- gGCCGGGGCCUcgGCGGCgacCGCagcgaccUGGGCGg -3'
miRNA:   3'- gCGGUCCCGGA--CGCCG---GCG-------GCCCGCg -5'
26519 3' -68.6 NC_005357.1 + 10328 0.67 0.117403
Target:  5'- uCGCCA-GGCCguaGCcGUCGCUGcGGCGUg -3'
miRNA:   3'- -GCGGUcCCGGa--CGcCGGCGGC-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 10330 0.7 0.070766
Target:  5'- gGCCAGGGCgUugagcaacGCGGCCGUguuggCGGG-GCc -3'
miRNA:   3'- gCGGUCCCGgA--------CGCCGGCG-----GCCCgCG- -5'
26519 3' -68.6 NC_005357.1 + 10927 0.66 0.151886
Target:  5'- cCGCCgguuugcAGGGCCUcgggcaguugcGCGGCgacaGCCGGGg-- -3'
miRNA:   3'- -GCGG-------UCCCGGA-----------CGCCGg---CGGCCCgcg -5'
26519 3' -68.6 NC_005357.1 + 11126 0.7 0.074682
Target:  5'- aGCC-GGGCCaccacGCGGUCGCCaGGCu- -3'
miRNA:   3'- gCGGuCCCGGa----CGCCGGCGGcCCGcg -5'
26519 3' -68.6 NC_005357.1 + 11405 0.77 0.016988
Target:  5'- gGCCAGGGUCUugagcaGCGGCgaGCCGGcGUGCa -3'
miRNA:   3'- gCGGUCCCGGA------CGCCGg-CGGCC-CGCG- -5'
26519 3' -68.6 NC_005357.1 + 11586 0.87 0.002936
Target:  5'- cCGcCCAGGGCCgccgGCuGGCCGCCGGGCaGCa -3'
miRNA:   3'- -GC-GGUCCCGGa---CG-CCGGCGGCCCG-CG- -5'
26519 3' -68.6 NC_005357.1 + 12333 0.73 0.038778
Target:  5'- uCGCCugggacaAGGGCC-GUGGCgC-CCGGGCGCc -3'
miRNA:   3'- -GCGG-------UCCCGGaCGCCG-GcGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 13053 0.66 0.136964
Target:  5'- gCGCCgaguccgAGGGCUgggGCaaGGCCaCCGGcGCGUg -3'
miRNA:   3'- -GCGG-------UCCCGGa--CG--CCGGcGGCC-CGCG- -5'
26519 3' -68.6 NC_005357.1 + 13156 0.69 0.076718
Target:  5'- gCGCCucgaugucGGCCagUGuCGGCCGCgcUGGGCGCc -3'
miRNA:   3'- -GCGGuc------CCGG--AC-GCCGGCG--GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 13305 0.66 0.138393
Target:  5'- gCGCCGGGGCCggcguuguaggcgGCguaggcuuucggcaGGUCGCCGccgaagucGCGCa -3'
miRNA:   3'- -GCGGUCCCGGa------------CG--------------CCGGCGGCc-------CGCG- -5'
26519 3' -68.6 NC_005357.1 + 13447 0.7 0.065259
Target:  5'- cCGCCA--GCUUgGCGGCC-UCGGGCGCg -3'
miRNA:   3'- -GCGGUccCGGA-CGCCGGcGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 13650 0.67 0.127
Target:  5'- -aCCAGGGCaaGCGcGaCGCCGuGCGCg -3'
miRNA:   3'- gcGGUCCCGgaCGC-CgGCGGCcCGCG- -5'
26519 3' -68.6 NC_005357.1 + 13875 0.69 0.09009
Target:  5'- gCGCCGcgauGGCCgGCGGCCGCaaGGuCGUg -3'
miRNA:   3'- -GCGGUc---CCGGaCGCCGGCGgcCC-GCG- -5'
26519 3' -68.6 NC_005357.1 + 14137 0.67 0.114356
Target:  5'- gGCCAGcGGCUUGCcuuccGGCCGUUccaGCGCg -3'
miRNA:   3'- gCGGUC-CCGGACG-----CCGGCGGcc-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.