miRNA display CGI


Results 81 - 99 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26519 3' -68.6 NC_005357.1 + 30837 0.7 0.072699
Target:  5'- uGcCCGGcGGCCagccgGCGGCC-CUGGGCGg -3'
miRNA:   3'- gC-GGUC-CCGGa----CGCCGGcGGCCCGCg -5'
26519 3' -68.6 NC_005357.1 + 31064 0.66 0.13732
Target:  5'- gGCCcgaacaucaGGGGCCUG-GuGCCGCUGcucaccucGGUGCa -3'
miRNA:   3'- gCGG---------UCCCGGACgC-CGGCGGC--------CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 32348 0.66 0.148405
Target:  5'- cCGcCCAGGuCgCUGCGGUCGCCGccgaggccccGGcCGCc -3'
miRNA:   3'- -GC-GGUCCcG-GACGCCGGCGGC----------CC-GCG- -5'
26519 3' -68.6 NC_005357.1 + 32615 0.68 0.091787
Target:  5'- gCGUCaAGGGCCgcgacgccGCGGUCGCUGuccugucgaaguucGGCGCc -3'
miRNA:   3'- -GCGG-UCCCGGa-------CGCCGGCGGC--------------CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 32915 0.71 0.06182
Target:  5'- gGCCAcGGCCUGCacGGCUGCUguucggccaGGGCGa -3'
miRNA:   3'- gCGGUcCCGGACG--CCGGCGG---------CCCGCg -5'
26519 3' -68.6 NC_005357.1 + 33156 0.67 0.12568
Target:  5'- aGCCGguguaccGGGCCgaccgcuuccUGCgguauggugaacugGaacuGCCGCCGGGCGCg -3'
miRNA:   3'- gCGGU-------CCCGG----------ACG--------------C----CGGCGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 34877 0.68 0.09758
Target:  5'- aGCCGGuGGCgCcGCGgaucgagcacGCCGCCGaGCGCa -3'
miRNA:   3'- gCGGUC-CCG-GaCGC----------CGGCGGCcCGCG- -5'
26519 3' -68.6 NC_005357.1 + 36076 0.71 0.058557
Target:  5'- gCGCCccGGCCUuCGG--GCCGGGCGCu -3'
miRNA:   3'- -GCGGucCCGGAcGCCggCGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 37268 0.7 0.072699
Target:  5'- uCGCCaAGGGCgUGagcagcgaCGGCCGCCu-GCGCg -3'
miRNA:   3'- -GCGG-UCCCGgAC--------GCCGGCGGccCGCG- -5'
26519 3' -68.6 NC_005357.1 + 37624 0.67 0.120524
Target:  5'- gGCCAGcaaucccgcaGcGCCaGcCGGCgUGCUGGGCGCa -3'
miRNA:   3'- gCGGUC----------C-CGGaC-GCCG-GCGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 37921 0.72 0.051112
Target:  5'- gCGCCAaGcGCCUGUGG-CGCCGcGCGCa -3'
miRNA:   3'- -GCGGUcC-CGGACGCCgGCGGCcCGCG- -5'
26519 3' -68.6 NC_005357.1 + 38381 0.67 0.111384
Target:  5'- gGCCGcuGGCCUGCcGCuCGCCGcGGCcgGCu -3'
miRNA:   3'- gCGGUc-CCGGACGcCG-GCGGC-CCG--CG- -5'
26519 3' -68.6 NC_005357.1 + 38727 0.67 0.130358
Target:  5'- gCGCCgcauGGGGCa-GCGcGUCGCCGuGGUGg -3'
miRNA:   3'- -GCGG----UCCCGgaCGC-CGGCGGC-CCGCg -5'
26519 3' -68.6 NC_005357.1 + 39342 0.67 0.123723
Target:  5'- uGCCgcgugucgaAGGGCaugggUGCGGCU--CGGGCGCu -3'
miRNA:   3'- gCGG---------UCCCGg----ACGCCGGcgGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 40940 0.68 0.091787
Target:  5'- cCGaCCAGcacugcgauaccccGGCCUGCcaggaGGCCGCCGaccGCGCc -3'
miRNA:   3'- -GC-GGUC--------------CCGGACG-----CCGGCGGCc--CGCG- -5'
26519 3' -68.6 NC_005357.1 + 41052 0.67 0.111384
Target:  5'- cCGCgAGGaCUUGCgcuucGGUCGCCGGauGCGCa -3'
miRNA:   3'- -GCGgUCCcGGACG-----CCGGCGGCC--CGCG- -5'
26519 3' -68.6 NC_005357.1 + 41110 0.72 0.048399
Target:  5'- gCGCUugucGGCCUgGUGGCCGUCgcccuGGGCGCg -3'
miRNA:   3'- -GCGGuc--CCGGA-CGCCGGCGG-----CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 41378 0.66 0.144622
Target:  5'- aCGCCGGuucgcGGCgacaUGCuGCCGCCGGcCGUg -3'
miRNA:   3'- -GCGGUC-----CCGg---ACGcCGGCGGCCcGCG- -5'
26519 3' -68.6 NC_005357.1 + 41911 0.7 0.063517
Target:  5'- gGCCGacagaaccGCCUGCaaGCCGCCGcGGCGCa -3'
miRNA:   3'- gCGGUcc------CGGACGc-CGGCGGC-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.