miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26519 3' -68.6 NC_005357.1 + 13156 0.69 0.076718
Target:  5'- gCGCCucgaugucGGCCagUGuCGGCCGCgcUGGGCGCc -3'
miRNA:   3'- -GCGGuc------CCGG--AC-GCCGGCG--GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 37921 0.72 0.051112
Target:  5'- gCGCCAaGcGCCUGUGG-CGCCGcGCGCa -3'
miRNA:   3'- -GCGGUcC-CGGACGCCgGCGGCcCGCG- -5'
26519 3' -68.6 NC_005357.1 + 36076 0.71 0.058557
Target:  5'- gCGCCccGGCCUuCGG--GCCGGGCGCu -3'
miRNA:   3'- -GCGGucCCGGAcGCCggCGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 19037 0.71 0.060167
Target:  5'- aGCCcuGGUa-GCGGCCGCCGGcgGCGUc -3'
miRNA:   3'- gCGGucCCGgaCGCCGGCGGCC--CGCG- -5'
26519 3' -68.6 NC_005357.1 + 16042 0.71 0.06182
Target:  5'- uGCCAGuuguaGGCCaguucgcgcacGUGGCCGCCGcGCGCg -3'
miRNA:   3'- gCGGUC-----CCGGa----------CGCCGGCGGCcCGCG- -5'
26519 3' -68.6 NC_005357.1 + 32915 0.71 0.06182
Target:  5'- gGCCAcGGCCUGCacGGCUGCUguucggccaGGGCGa -3'
miRNA:   3'- gCGGUcCCGGACG--CCGGCGG---------CCCGCg -5'
26519 3' -68.6 NC_005357.1 + 13447 0.7 0.065259
Target:  5'- cCGCCA--GCUUgGCGGCC-UCGGGCGCg -3'
miRNA:   3'- -GCGGUccCGGA-CGCCGGcGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 28524 0.7 0.067776
Target:  5'- uGCCGGcgcugcuuguugaacGGCacgaccuUGCGGCCGCCGgccaucgcGGCGCg -3'
miRNA:   3'- gCGGUC---------------CCGg------ACGCCGGCGGC--------CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 37268 0.7 0.072699
Target:  5'- uCGCCaAGGGCgUGagcagcgaCGGCCGCCu-GCGCg -3'
miRNA:   3'- -GCGG-UCCCGgAC--------GCCGGCGGccCGCG- -5'
26519 3' -68.6 NC_005357.1 + 14833 0.72 0.051112
Target:  5'- uCGcCCAGGucgauGCCguugGCGGCCagcgccgcacGCUGGGCGCc -3'
miRNA:   3'- -GC-GGUCC-----CGGa---CGCCGG----------CGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 16123 0.72 0.048267
Target:  5'- aCGUCGGuGGCCccgacguaggacUGCGGCCGCacgcugaugguggUGGGCGUu -3'
miRNA:   3'- -GCGGUC-CCGG------------ACGCCGGCG-------------GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 9458 0.72 0.047096
Target:  5'- aCGCCgAGGGCCUGauaGGCaGCgaauucuuCGGGCGUc -3'
miRNA:   3'- -GCGG-UCCCGGACg--CCGgCG--------GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 11405 0.77 0.016988
Target:  5'- gGCCAGGGUCUugagcaGCGGCgaGCCGGcGUGCa -3'
miRNA:   3'- gCGGUCCCGGA------CGCCGg-CGGCC-CGCG- -5'
26519 3' -68.6 NC_005357.1 + 27500 0.77 0.017957
Target:  5'- uGCCGGcGGCCU-CGGCCGCCagcuucucGGCGCg -3'
miRNA:   3'- gCGGUC-CCGGAcGCCGGCGGc-------CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 14421 0.77 0.019514
Target:  5'- uCGCCAGGcgcGCCUGCGGCaccguGuuGGGCGa -3'
miRNA:   3'- -GCGGUCC---CGGACGCCGg----CggCCCGCg -5'
26519 3' -68.6 NC_005357.1 + 6238 0.75 0.02503
Target:  5'- gGCCAGGGCCUGCa--CGCCGguaacGGUGCg -3'
miRNA:   3'- gCGGUCCCGGACGccgGCGGC-----CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 18067 0.73 0.036808
Target:  5'- gCGCgGGGuGCgUGCugGGCCGCCGaagccGGCGCg -3'
miRNA:   3'- -GCGgUCC-CGgACG--CCGGCGGC-----CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 8852 0.73 0.037729
Target:  5'- gGCCAGcgcguuGGCCU-CGGUCGCCacgaagcGGGCGCg -3'
miRNA:   3'- gCGGUC------CCGGAcGCCGGCGG-------CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 1707 0.73 0.037832
Target:  5'- uCGCCGuGGGCCgGCGuGCCGgCgaGGGCGUc -3'
miRNA:   3'- -GCGGU-CCCGGaCGC-CGGCgG--CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 25722 0.73 0.03953
Target:  5'- gCGgCGGGGUCgucguccucaccgGCGGCagcaCGCUGGGCGCg -3'
miRNA:   3'- -GCgGUCCCGGa------------CGCCG----GCGGCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.