miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26519 3' -68.6 NC_005357.1 + 37921 0.72 0.051112
Target:  5'- gCGCCAaGcGCCUGUGG-CGCCGcGCGCa -3'
miRNA:   3'- -GCGGUcC-CGGACGCCgGCGGCcCGCG- -5'
26519 3' -68.6 NC_005357.1 + 36076 0.71 0.058557
Target:  5'- gCGCCccGGCCUuCGG--GCCGGGCGCu -3'
miRNA:   3'- -GCGGucCCGGAcGCCggCGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 28658 0.68 0.09502
Target:  5'- uGCCAgaucGGuGCCgGCGGCCucGCCagcgcGGCGCg -3'
miRNA:   3'- gCGGU----CC-CGGaCGCCGG--CGGc----CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 32615 0.68 0.091787
Target:  5'- gCGUCaAGGGCCgcgacgccGCGGUCGCUGuccugucgaaguucGGCGCc -3'
miRNA:   3'- -GCGG-UCCCGGa-------CGCCGGCGGC--------------CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 671 0.69 0.087717
Target:  5'- aGCCAccaGGCCgccuacgGCGGCgccgGCCGGGcCGCc -3'
miRNA:   3'- gCGGUc--CCGGa------CGCCGg---CGGCCC-GCG- -5'
26519 3' -68.6 NC_005357.1 + 29591 0.69 0.079657
Target:  5'- gCGcCCAGGcGC--GCGGUuugccaguuguccagCGCCGGGCGCu -3'
miRNA:   3'- -GC-GGUCC-CGgaCGCCG---------------GCGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 432 0.69 0.076718
Target:  5'- gGCCGuaccuugucguuGGGCUgcugcGCGGCCaGCuugCGGGCGCu -3'
miRNA:   3'- gCGGU------------CCCGGa----CGCCGG-CG---GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 13156 0.69 0.076718
Target:  5'- gCGCCucgaugucGGCCagUGuCGGCCGCgcUGGGCGCc -3'
miRNA:   3'- -GCGGuc------CCGG--AC-GCCGGCG--GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 37268 0.7 0.072699
Target:  5'- uCGCCaAGGGCgUGagcagcgaCGGCCGCCu-GCGCg -3'
miRNA:   3'- -GCGG-UCCCGgAC--------GCCGGCGGccCGCG- -5'
26519 3' -68.6 NC_005357.1 + 28524 0.7 0.067776
Target:  5'- uGCCGGcgcugcuuguugaacGGCacgaccuUGCGGCCGCCGgccaucgcGGCGCg -3'
miRNA:   3'- gCGGUC---------------CCGg------ACGCCGGCGGC--------CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 13447 0.7 0.065259
Target:  5'- cCGCCA--GCUUgGCGGCC-UCGGGCGCg -3'
miRNA:   3'- -GCGGUccCGGA-CGCCGGcGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 32915 0.71 0.06182
Target:  5'- gGCCAcGGCCUGCacGGCUGCUguucggccaGGGCGa -3'
miRNA:   3'- gCGGUcCCGGACG--CCGGCGG---------CCCGCg -5'
26519 3' -68.6 NC_005357.1 + 16042 0.71 0.06182
Target:  5'- uGCCAGuuguaGGCCaguucgcgcacGUGGCCGCCGcGCGCg -3'
miRNA:   3'- gCGGUC-----CCGGa----------CGCCGGCGGCcCGCG- -5'
26519 3' -68.6 NC_005357.1 + 19037 0.71 0.060167
Target:  5'- aGCCcuGGUa-GCGGCCGCCGGcgGCGUc -3'
miRNA:   3'- gCGGucCCGgaCGCCGGCGGCC--CGCG- -5'
26519 3' -68.6 NC_005357.1 + 21283 0.72 0.049737
Target:  5'- -aCCAGGGCgCggacacgGCGGCCaaGCUGGGCaGCg -3'
miRNA:   3'- gcGGUCCCG-Ga------CGCCGG--CGGCCCG-CG- -5'
26519 3' -68.6 NC_005357.1 + 41110 0.72 0.048399
Target:  5'- gCGCUugucGGCCUgGUGGCCGUCgcccuGGGCGCg -3'
miRNA:   3'- -GCGGuc--CCGGA-CGCCGGCGG-----CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 10067 0.73 0.040964
Target:  5'- gGCCGGGGCCUcgGCGGCgacCGCagcgaccUGGGCGg -3'
miRNA:   3'- gCGGUCCCGGA--CGCCG---GCG-------GCCCGCg -5'
26519 3' -68.6 NC_005357.1 + 12333 0.73 0.038778
Target:  5'- uCGCCugggacaAGGGCC-GUGGCgC-CCGGGCGCc -3'
miRNA:   3'- -GCGG-------UCCCGGaCGCCG-GcGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 6366 0.83 0.006221
Target:  5'- gGCCGGGGCgCUGgguuacaccagguCGGCCGCCGcGGCGCc -3'
miRNA:   3'- gCGGUCCCG-GAC-------------GCCGGCGGC-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 5770 0.66 0.148405
Target:  5'- gCGCCAGGGCCUugaccaucGUGucCCGCCaucgcGGCaGCg -3'
miRNA:   3'- -GCGGUCCCGGA--------CGCc-GGCGGc----CCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.