miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26519 3' -68.6 NC_005357.1 + 24022 0.69 0.09009
Target:  5'- aCGCCAccuucGCCgacGUGGCCGCCaccGGCGCc -3'
miRNA:   3'- -GCGGUcc---CGGa--CGCCGGCGGc--CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 40940 0.68 0.091787
Target:  5'- cCGaCCAGcacugcgauaccccGGCCUGCcaggaGGCCGCCGaccGCGCc -3'
miRNA:   3'- -GC-GGUC--------------CCGGACG-----CCGGCGGCc--CGCG- -5'
26519 3' -68.6 NC_005357.1 + 8296 0.68 0.09502
Target:  5'- uGCCGGGGCagUGCaGCCaGC-GGuGCGCg -3'
miRNA:   3'- gCGGUCCCGg-ACGcCGG-CGgCC-CGCG- -5'
26519 3' -68.6 NC_005357.1 + 19307 0.68 0.09758
Target:  5'- uGUCAGGaGCCguuaccGCuGUCGCCguGGGCGCc -3'
miRNA:   3'- gCGGUCC-CGGa-----CGcCGGCGG--CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 4548 0.68 0.105656
Target:  5'- gGUCuuGGGCUUGaGGCCgaagucGCCGaGGCGCu -3'
miRNA:   3'- gCGGu-CCCGGACgCCGG------CGGC-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 6296 0.68 0.108484
Target:  5'- gCGCCGGGGCUuaucuccggUGCGuGCaagaCGcGGCGCg -3'
miRNA:   3'- -GCGGUCCCGG---------ACGC-CGgcg-GC-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 10330 0.7 0.070766
Target:  5'- gGCCAGGGCgUugagcaacGCGGCCGUguuggCGGG-GCc -3'
miRNA:   3'- gCGGUCCCGgA--------CGCCGGCG-----GCCCgCG- -5'
26519 3' -68.6 NC_005357.1 + 7142 0.7 0.068882
Target:  5'- aGUCGucGgCUGCGGCCuggaugaccaggGCCGGGCGCu -3'
miRNA:   3'- gCGGUccCgGACGCCGG------------CGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 27686 0.7 0.065436
Target:  5'- gCGCCAaugcugcgcguacuGCCUGgGGCUaCCGGGCGCa -3'
miRNA:   3'- -GCGGUcc------------CGGACgCCGGcGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 6366 0.83 0.006221
Target:  5'- gGCCGGGGCgCUGgguuacaccagguCGGCCGCCGcGGCGCc -3'
miRNA:   3'- gCGGUCCCG-GAC-------------GCCGGCGGC-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 12333 0.73 0.038778
Target:  5'- uCGCCugggacaAGGGCC-GUGGCgC-CCGGGCGCc -3'
miRNA:   3'- -GCGG-------UCCCGGaCGCCG-GcGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 10067 0.73 0.040964
Target:  5'- gGCCGGGGCCUcgGCGGCgacCGCagcgaccUGGGCGg -3'
miRNA:   3'- gCGGUCCCGGA--CGCCG---GCG-------GCCCGCg -5'
26519 3' -68.6 NC_005357.1 + 41110 0.72 0.048399
Target:  5'- gCGCUugucGGCCUgGUGGCCGUCgcccuGGGCGCg -3'
miRNA:   3'- -GCGGuc--CCGGA-CGCCGGCGG-----CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 21283 0.72 0.049737
Target:  5'- -aCCAGGGCgCggacacgGCGGCCaaGCUGGGCaGCg -3'
miRNA:   3'- gcGGUCCCG-Ga------CGCCGG--CGGCCCG-CG- -5'
26519 3' -68.6 NC_005357.1 + 17748 0.71 0.053972
Target:  5'- aGCCuGGGCgUggacGUGGcCCGCggCGGGCGCg -3'
miRNA:   3'- gCGGuCCCGgA----CGCC-GGCG--GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 14625 0.71 0.058557
Target:  5'- gCGCgAGGacGUgCUGCGGCUGCgCGGcGCGCg -3'
miRNA:   3'- -GCGgUCC--CG-GACGCCGGCG-GCC-CGCG- -5'
26519 3' -68.6 NC_005357.1 + 21990 0.71 0.060167
Target:  5'- -aCgAGGGCCUGCGGCUaCU-GGCGCa -3'
miRNA:   3'- gcGgUCCCGGACGCCGGcGGcCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 6591 0.7 0.063517
Target:  5'- gGCCAgGGGgCUGCGGUCuuuGUcgaugaccagCGGGCGCg -3'
miRNA:   3'- gCGGU-CCCgGACGCCGG---CG----------GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 41911 0.7 0.063517
Target:  5'- gGCCGacagaaccGCCUGCaaGCCGCCGcGGCGCa -3'
miRNA:   3'- gCGGUcc------CGGACGc-CGGCGGC-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 14720 0.7 0.065259
Target:  5'- uGaCCGGcGGCgaGCcGCUGCCGGcGCGCg -3'
miRNA:   3'- gC-GGUC-CCGgaCGcCGGCGGCC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.