miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26519 3' -68.6 NC_005357.1 + 14990 1.1 0.000033
Target:  5'- gCGCCAGGGCCUGCGGCCGCCGGGCGCg -3'
miRNA:   3'- -GCGGUCCCGGACGCCGGCGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 11126 0.7 0.074682
Target:  5'- aGCC-GGGCCaccacGCGGUCGCCaGGCu- -3'
miRNA:   3'- gCGGuCCCGGa----CGCCGGCGGcCCGcg -5'
26519 3' -68.6 NC_005357.1 + 2823 0.69 0.080949
Target:  5'- gGCCAGGuGCUcGCGGCCacGCgcaGcGGCGCc -3'
miRNA:   3'- gCGGUCC-CGGaCGCCGG--CGg--C-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 5770 0.66 0.148405
Target:  5'- gCGCCAGGGCCUugaccaucGUGucCCGCCaucgcGGCaGCg -3'
miRNA:   3'- -GCGGUCCCGGA--------CGCc-GGCGGc----CCG-CG- -5'
26519 3' -68.6 NC_005357.1 + 41110 0.72 0.048399
Target:  5'- gCGCUugucGGCCUgGUGGCCGUCgcccuGGGCGCg -3'
miRNA:   3'- -GCGGuc--CCGGA-CGCCGGCGG-----CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 21283 0.72 0.049737
Target:  5'- -aCCAGGGCgCggacacgGCGGCCaaGCUGGGCaGCg -3'
miRNA:   3'- gcGGUCCCG-Ga------CGCCGG--CGGCCCG-CG- -5'
26519 3' -68.6 NC_005357.1 + 14625 0.71 0.058557
Target:  5'- gCGCgAGGacGUgCUGCGGCUGCgCGGcGCGCg -3'
miRNA:   3'- -GCGgUCC--CG-GACGCCGGCG-GCC-CGCG- -5'
26519 3' -68.6 NC_005357.1 + 21990 0.71 0.060167
Target:  5'- -aCgAGGGCCUGCGGCUaCU-GGCGCa -3'
miRNA:   3'- gcGgUCCCGGACGCCGGcGGcCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 14720 0.7 0.065259
Target:  5'- uGaCCGGcGGCgaGCcGCUGCCGGcGCGCg -3'
miRNA:   3'- gC-GGUC-CCGgaCGcCGGCGGCC-CGCG- -5'
26519 3' -68.6 NC_005357.1 + 30837 0.7 0.072699
Target:  5'- uGcCCGGcGGCCagccgGCGGCC-CUGGGCGg -3'
miRNA:   3'- gC-GGUC-CCGGa----CGCCGGcGGCCCGCg -5'
26519 3' -68.6 NC_005357.1 + 7142 0.7 0.068882
Target:  5'- aGUCGucGgCUGCGGCCuggaugaccaggGCCGGGCGCu -3'
miRNA:   3'- gCGGUccCgGACGCCGG------------CGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 41911 0.7 0.063517
Target:  5'- gGCCGacagaaccGCCUGCaaGCCGCCGcGGCGCa -3'
miRNA:   3'- gCGGUcc------CGGACGc-CGGCGGC-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 6366 0.83 0.006221
Target:  5'- gGCCGGGGCgCUGgguuacaccagguCGGCCGCCGcGGCGCc -3'
miRNA:   3'- gCGGUCCCG-GAC-------------GCCGGCGGC-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 10330 0.7 0.070766
Target:  5'- gGCCAGGGCgUugagcaacGCGGCCGUguuggCGGG-GCc -3'
miRNA:   3'- gCGGUCCCGgA--------CGCCGGCG-----GCCCgCG- -5'
26519 3' -68.6 NC_005357.1 + 12333 0.73 0.038778
Target:  5'- uCGCCugggacaAGGGCC-GUGGCgC-CCGGGCGCc -3'
miRNA:   3'- -GCGG-------UCCCGGaCGCCG-GcGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 6591 0.7 0.063517
Target:  5'- gGCCAgGGGgCUGCGGUCuuuGUcgaugaccagCGGGCGCg -3'
miRNA:   3'- gCGGU-CCCgGACGCCGG---CG----------GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 2642 0.7 0.072503
Target:  5'- aGCCaccacuuugcggaAGGGCCaGCGGUCGCCcaGGUGUu -3'
miRNA:   3'- gCGG-------------UCCCGGaCGCCGGCGGc-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 14930 0.69 0.076512
Target:  5'- aGCUGGcGGCCga-GGCCGCCGGcauccucGCGUg -3'
miRNA:   3'- gCGGUC-CCGGacgCCGGCGGCC-------CGCG- -5'
26519 3' -68.6 NC_005357.1 + 10067 0.73 0.040964
Target:  5'- gGCCGGGGCCUcgGCGGCgacCGCagcgaccUGGGCGg -3'
miRNA:   3'- gCGGUCCCGGA--CGCCG---GCG-------GCCCGCg -5'
26519 3' -68.6 NC_005357.1 + 17748 0.71 0.053972
Target:  5'- aGCCuGGGCgUggacGUGGcCCGCggCGGGCGCg -3'
miRNA:   3'- gCGGuCCCGgA----CGCC-GGCG--GCCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.