miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26519 3' -68.6 NC_005357.1 + 19307 0.68 0.09758
Target:  5'- uGUCAGGaGCCguuaccGCuGUCGCCguGGGCGCc -3'
miRNA:   3'- gCGGUCC-CGGa-----CGcCGGCGG--CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 9214 0.66 0.144622
Target:  5'- aGCCAGcgguGGCCgugccgcgauagccaGCGGUgGCCgugccgaGGGCGCc -3'
miRNA:   3'- gCGGUC----CCGGa--------------CGCCGgCGG-------CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 1763 0.66 0.13732
Target:  5'- gGCC--GGCCUGCgccuGGCgCGUCGGGC-Cg -3'
miRNA:   3'- gCGGucCCGGACG----CCG-GCGGCCCGcG- -5'
26519 3' -68.6 NC_005357.1 + 28878 0.67 0.130358
Target:  5'- uCGCCGuGGGCaccgagucagGCGGCCGaCaguucGGCGCg -3'
miRNA:   3'- -GCGGU-CCCGga--------CGCCGGC-Ggc---CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 17991 0.66 0.143134
Target:  5'- uCGCCGaGGCCgcgcGCGGCaccgacaaaucggGCCGGcuGCGCu -3'
miRNA:   3'- -GCGGUcCCGGa---CGCCGg------------CGGCC--CGCG- -5'
26519 3' -68.6 NC_005357.1 + 10927 0.66 0.151886
Target:  5'- cCGCCgguuugcAGGGCCUcgggcaguugcGCGGCgacaGCCGGGg-- -3'
miRNA:   3'- -GCGG-------UCCCGGA-----------CGCCGg---CGGCCCgcg -5'
26519 3' -68.6 NC_005357.1 + 17472 0.66 0.152277
Target:  5'- aCGCCAGGGCCUGCa--CGaacaGcGGCGa -3'
miRNA:   3'- -GCGGUCCCGGACGccgGCgg--C-CCGCg -5'
26519 3' -68.6 NC_005357.1 + 8852 0.73 0.037729
Target:  5'- gGCCAGcgcguuGGCCU-CGGUCGCCacgaagcGGGCGCg -3'
miRNA:   3'- gCGGUC------CCGGAcGCCGGCGG-------CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 28658 0.68 0.09502
Target:  5'- uGCCAgaucGGuGCCgGCGGCCucGCCagcgcGGCGCg -3'
miRNA:   3'- gCGGU----CC-CGGaCGCCGG--CGGc----CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 32348 0.66 0.148405
Target:  5'- cCGcCCAGGuCgCUGCGGUCGCCGccgaggccccGGcCGCc -3'
miRNA:   3'- -GC-GGUCCcG-GACGCCGGCGGC----------CC-GCG- -5'
26519 3' -68.6 NC_005357.1 + 8128 0.66 0.140928
Target:  5'- gGCCGgcguugguuguGGGCgUGCGGgUGUCGG-CGCu -3'
miRNA:   3'- gCGGU-----------CCCGgACGCCgGCGGCCcGCG- -5'
26519 3' -68.6 NC_005357.1 + 34877 0.68 0.09758
Target:  5'- aGCCGGuGGCgCcGCGgaucgagcacGCCGCCGaGCGCa -3'
miRNA:   3'- gCGGUC-CCG-GaCGC----------CGGCGGCcCGCG- -5'
26519 3' -68.6 NC_005357.1 + 29745 0.68 0.100205
Target:  5'- aCGCCGuagaacucGGCCU-CGGCUGCUGccaGGCGCg -3'
miRNA:   3'- -GCGGUc-------CCGGAcGCCGGCGGC---CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 30178 0.68 0.102896
Target:  5'- gCGCCAGucggugaaGGCCaUGaaguaGCCGCCGGGCu- -3'
miRNA:   3'- -GCGGUC--------CCGG-ACgc---CGGCGGCCCGcg -5'
26519 3' -68.6 NC_005357.1 + 17268 0.68 0.10482
Target:  5'- aGCCGGGGauaUUGCcguccacgaagccgGcGCCG-CGGGCGCg -3'
miRNA:   3'- gCGGUCCCg--GACG--------------C-CGGCgGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 32615 0.68 0.091787
Target:  5'- gCGUCaAGGGCCgcgacgccGCGGUCGCUGuccugucgaaguucGGCGCc -3'
miRNA:   3'- -GCGG-UCCCGGa-------CGCCGGCGGC--------------CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 27422 0.68 0.105656
Target:  5'- gCGCCuGGcgcaccgcGCCcgGCGGCCGCaggcccuGGCGCu -3'
miRNA:   3'- -GCGGuCC--------CGGa-CGCCGGCGgc-----CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 19037 0.71 0.060167
Target:  5'- aGCCcuGGUa-GCGGCCGCCGGcgGCGUc -3'
miRNA:   3'- gCGGucCCGgaCGCCGGCGGCC--CGCG- -5'
26519 3' -68.6 NC_005357.1 + 36076 0.71 0.058557
Target:  5'- gCGCCccGGCCUuCGG--GCCGGGCGCu -3'
miRNA:   3'- -GCGGucCCGGAcGCCggCGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 37921 0.72 0.051112
Target:  5'- gCGCCAaGcGCCUGUGG-CGCCGcGCGCa -3'
miRNA:   3'- -GCGGUcC-CGGACGCCgGCGGCcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.