miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26519 3' -68.6 NC_005357.1 + 14833 0.72 0.051112
Target:  5'- uCGcCCAGGucgauGCCguugGCGGCCagcgccgcacGCUGGGCGCc -3'
miRNA:   3'- -GC-GGUCC-----CGGa---CGCCGG----------CGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 9458 0.72 0.047096
Target:  5'- aCGCCgAGGGCCUGauaGGCaGCgaauucuuCGGGCGUc -3'
miRNA:   3'- -GCGG-UCCCGGACg--CCGgCG--------GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 8852 0.73 0.037729
Target:  5'- gGCCAGcgcguuGGCCU-CGGUCGCCacgaagcGGGCGCg -3'
miRNA:   3'- gCGGUC------CCGGAcGCCGGCGG-------CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 18067 0.73 0.036808
Target:  5'- gCGCgGGGuGCgUGCugGGCCGCCGaagccGGCGCg -3'
miRNA:   3'- -GCGgUCC-CGgACG--CCGGCGGC-----CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 28658 0.68 0.09502
Target:  5'- uGCCAgaucGGuGCCgGCGGCCucGCCagcgcGGCGCg -3'
miRNA:   3'- gCGGU----CC-CGGaCGCCGG--CGGc----CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 34877 0.68 0.09758
Target:  5'- aGCCGGuGGCgCcGCGgaucgagcacGCCGCCGaGCGCa -3'
miRNA:   3'- gCGGUC-CCG-GaCGC----------CGGCGGCcCGCG- -5'
26519 3' -68.6 NC_005357.1 + 29745 0.68 0.100205
Target:  5'- aCGCCGuagaacucGGCCU-CGGCUGCUGccaGGCGCg -3'
miRNA:   3'- -GCGGUc-------CCGGAcGCCGGCGGC---CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 13305 0.66 0.138393
Target:  5'- gCGCCGGGGCCggcguuguaggcgGCguaggcuuucggcaGGUCGCCGccgaagucGCGCa -3'
miRNA:   3'- -GCGGUCCCGGa------------CG--------------CCGGCGGCc-------CGCG- -5'
26519 3' -68.6 NC_005357.1 + 31064 0.66 0.13732
Target:  5'- gGCCcgaacaucaGGGGCCUG-GuGCCGCUGcucaccucGGUGCa -3'
miRNA:   3'- gCGG---------UCCCGGACgC-CGGCGGC--------CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 30056 0.66 0.136254
Target:  5'- uCGCaCuGGuGCCggaaauauccuuugUGCGGCgC-CCGGGCGCc -3'
miRNA:   3'- -GCG-GuCC-CGG--------------ACGCCG-GcGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 38727 0.67 0.130358
Target:  5'- gCGCCgcauGGGGCa-GCGcGUCGCCGuGGUGg -3'
miRNA:   3'- -GCGG----UCCCGgaCGC-CGGCGGC-CCGCg -5'
26519 3' -68.6 NC_005357.1 + 39342 0.67 0.123723
Target:  5'- uGCCgcgugucgaAGGGCaugggUGCGGCU--CGGGCGCu -3'
miRNA:   3'- gCGG---------UCCCGg----ACGCCGGcgGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 19482 0.67 0.123723
Target:  5'- gCGCCAGGuGCCgguggGCaGGCCGCUGcGaaccguggucuuGUGCu -3'
miRNA:   3'- -GCGGUCC-CGGa----CG-CCGGCGGC-C------------CGCG- -5'
26519 3' -68.6 NC_005357.1 + 1036 0.67 0.1234
Target:  5'- gGCCAcGGCCgGCGGCagcauguCGCCGcgaaccGGCGUc -3'
miRNA:   3'- gCGGUcCCGGaCGCCG-------GCGGC------CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 7599 0.67 0.121795
Target:  5'- gGUCAGGGUCUGUccguCUGCCguggugauggucaggGGGCGCg -3'
miRNA:   3'- gCGGUCCCGGACGcc--GGCGG---------------CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 24609 0.67 0.120524
Target:  5'- uGCCGGGGUaggucaGCGGCaCGUCGaaccacauGGCGUg -3'
miRNA:   3'- gCGGUCCCGga----CGCCG-GCGGC--------CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 4339 0.67 0.120524
Target:  5'- uGCCAGccuugaugcuGGCCguUGC-GuuGCCGGuGCGCg -3'
miRNA:   3'- gCGGUC----------CCGG--ACGcCggCGGCC-CGCG- -5'
26519 3' -68.6 NC_005357.1 + 27422 0.68 0.105656
Target:  5'- gCGCCuGGcgcaccgcGCCcgGCGGCCGCaggcccuGGCGCu -3'
miRNA:   3'- -GCGGuCC--------CGGa-CGCCGGCGgc-----CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 17268 0.68 0.10482
Target:  5'- aGCCGGGGauaUUGCcguccacgaagccgGcGCCG-CGGGCGCg -3'
miRNA:   3'- gCGGUCCCg--GACG--------------C-CGGCgGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 30178 0.68 0.102896
Target:  5'- gCGCCAGucggugaaGGCCaUGaaguaGCCGCCGGGCu- -3'
miRNA:   3'- -GCGGUC--------CCGG-ACgc---CGGCGGCCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.