Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26519 | 5' | -56.1 | NC_005357.1 | + | 15024 | 1.1 | 0.00048 |
Target: 5'- cAGGCGCGCGACGACUACAAGAGCGACa -3' miRNA: 3'- -UCCGCGCGCUGCUGAUGUUCUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 31237 | 0.83 | 0.043552 |
Target: 5'- cGGCGCGCGGCccaGCUACGAGccgGGCGACg -3' miRNA: 3'- uCCGCGCGCUGc--UGAUGUUC---UCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 34378 | 0.77 | 0.135602 |
Target: 5'- uGGGCGCGCgucaugGACGGCgGCAAGgacGGCGGCc -3' miRNA: 3'- -UCCGCGCG------CUGCUGaUGUUC---UCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 20590 | 0.74 | 0.205394 |
Target: 5'- aAGGCGCagGCcauCGACUACAAGAGCa-- -3' miRNA: 3'- -UCCGCG--CGcu-GCUGAUGUUCUCGcug -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 40339 | 0.73 | 0.234202 |
Target: 5'- uGGGCGCGCuacaugGACGACaucguggUGCu-GGGCGACg -3' miRNA: 3'- -UCCGCGCG------CUGCUG-------AUGuuCUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 31960 | 0.72 | 0.260851 |
Target: 5'- cGGUGCuGCG-CGACUuCcAGGGCGACg -3' miRNA: 3'- uCCGCG-CGCuGCUGAuGuUCUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 34774 | 0.72 | 0.281879 |
Target: 5'- cGGCGCGUGuACGGCa--AGGAGcCGGCg -3' miRNA: 3'- uCCGCGCGC-UGCUGaugUUCUC-GCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 15150 | 0.72 | 0.292143 |
Target: 5'- aAGGCGCGCGGCGAacugcgguucauugcCUcggcCAAGAGCcuggGGCg -3' miRNA: 3'- -UCCGCGCGCUGCU---------------GAu---GUUCUCG----CUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 14649 | 0.71 | 0.31987 |
Target: 5'- cGGCGCGCGcuuCGugUACGuguccGAGCcgGACg -3' miRNA: 3'- uCCGCGCGCu--GCugAUGUu----CUCG--CUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 9895 | 0.71 | 0.327914 |
Target: 5'- cAGGCGCGUGGCGAUguc--GAGCuGCa -3' miRNA: 3'- -UCCGCGCGCUGCUGauguuCUCGcUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 38979 | 0.7 | 0.339426 |
Target: 5'- gGGGCGCGCGGCGuCUGugaccaccugauucuUGAGuAGCGGg -3' miRNA: 3'- -UCCGCGCGCUGCuGAU---------------GUUC-UCGCUg -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 9323 | 0.7 | 0.344448 |
Target: 5'- cGGCGCaCGuCGGCgcgGCGGGcGGCGGCa -3' miRNA: 3'- uCCGCGcGCuGCUGa--UGUUC-UCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 5431 | 0.7 | 0.352937 |
Target: 5'- cGGCGCG-GAUGGCgGCGuGGGCGAg -3' miRNA: 3'- uCCGCGCgCUGCUGaUGUuCUCGCUg -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 4043 | 0.7 | 0.361573 |
Target: 5'- cGGC-CGCGGCGAgcgGCAGGccAGCGGCc -3' miRNA: 3'- uCCGcGCGCUGCUga-UGUUC--UCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 6624 | 0.7 | 0.361573 |
Target: 5'- cGGGCGCGUGGCG-CUGCGc--GCgGACa -3' miRNA: 3'- -UCCGCGCGCUGCuGAUGUucuCG-CUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 26369 | 0.69 | 0.397562 |
Target: 5'- -cGCGCGCGGCGGCcACGuGcGCGAa -3' miRNA: 3'- ucCGCGCGCUGCUGaUGUuCuCGCUg -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 37274 | 0.69 | 0.397562 |
Target: 5'- aGGGCGUgagcaGCGACGGCcGCcuGcGCGGCa -3' miRNA: 3'- -UCCGCG-----CGCUGCUGaUGuuCuCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 36345 | 0.69 | 0.397562 |
Target: 5'- aAGGcCGCGCucGACGACUuCGAG-GCGGu -3' miRNA: 3'- -UCC-GCGCG--CUGCUGAuGUUCuCGCUg -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 13623 | 0.69 | 0.406912 |
Target: 5'- cGGCGCGCuGGCuGCU-CAAGAuCGGCa -3' miRNA: 3'- uCCGCGCG-CUGcUGAuGUUCUcGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 3508 | 0.69 | 0.406912 |
Target: 5'- cAGaGCGCaGCG-CGAgaACccGAGAGCGACg -3' miRNA: 3'- -UC-CGCG-CGCuGCUgaUG--UUCUCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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