miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26519 5' -56.1 NC_005357.1 + 31686 0.67 0.539575
Target:  5'- cGaGCGCGCccuuGGCGAgCaGCAAG-GCGACg -3'
miRNA:   3'- uC-CGCGCG----CUGCU-GaUGUUCuCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 33731 0.67 0.539575
Target:  5'- cGGCagcaaucuGCGCGGCGcAC-ACcuGGGCGGCg -3'
miRNA:   3'- uCCG--------CGCGCUGC-UGaUGuuCUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 16470 0.67 0.539575
Target:  5'- cGGGgGCGUGACGGacagguCGGGcGCGAUa -3'
miRNA:   3'- -UCCgCGCGCUGCUgau---GUUCuCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 1085 0.67 0.539575
Target:  5'- cGGCGCGCGuacuucauguugGCGGCggu-AG-GCGGCa -3'
miRNA:   3'- uCCGCGCGC------------UGCUGauguUCuCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 26814 0.67 0.53849
Target:  5'- uAGGCGUGCuguuuuuGGCaGGCUGCGccgccccgauGGAGCGGg -3'
miRNA:   3'- -UCCGCGCG-------CUG-CUGAUGU----------UCUCGCUg -5'
26519 5' -56.1 NC_005357.1 + 20261 0.67 0.528757
Target:  5'- uGGUGCGCGAauuCGGCaaggACAAGuGCaGCa -3'
miRNA:   3'- uCCGCGCGCU---GCUGa---UGUUCuCGcUG- -5'
26519 5' -56.1 NC_005357.1 + 14741 0.67 0.518021
Target:  5'- cGGCGCGCGGCcuguauuccaaGACcACGguGGAGgUGGCg -3'
miRNA:   3'- uCCGCGCGCUG-----------CUGaUGU--UCUC-GCUG- -5'
26519 5' -56.1 NC_005357.1 + 36889 0.67 0.518021
Target:  5'- uGGCGgGCGACcugGGCggaACcuGGGCGGCc -3'
miRNA:   3'- uCCGCgCGCUG---CUGa--UGuuCUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 24557 0.67 0.496818
Target:  5'- -cGCaGCGCGGCGAUgGCGAGGcCGGCc -3'
miRNA:   3'- ucCG-CGCGCUGCUGaUGUUCUcGCUG- -5'
26519 5' -56.1 NC_005357.1 + 35953 0.67 0.496818
Target:  5'- cGGGCcuGCGCGGCGugcaguucCUGCGcGAcgGCGACg -3'
miRNA:   3'- -UCCG--CGCGCUGCu-------GAUGUuCU--CGCUG- -5'
26519 5' -56.1 NC_005357.1 + 4808 0.68 0.486363
Target:  5'- uGGCGCuGCGG-GAUUGCuGGccGGCGACa -3'
miRNA:   3'- uCCGCG-CGCUgCUGAUGuUC--UCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 10070 0.68 0.476014
Target:  5'- cGGgGCcucgGCGGCGACcGCAGcgaccuGGGCGGCg -3'
miRNA:   3'- uCCgCG----CGCUGCUGaUGUU------CUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 22228 0.68 0.476014
Target:  5'- cGGGCGCuGCcaaGAC--CGAGGGCGACg -3'
miRNA:   3'- -UCCGCG-CGcugCUGauGUUCUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 16456 0.68 0.469858
Target:  5'- cGGCGaggaaaccgaggaauCGgaCGACGGCUACAAGgucaagcgcGGCGACa -3'
miRNA:   3'- uCCGC---------------GC--GCUGCUGAUGUUC---------UCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 21660 0.68 0.465776
Target:  5'- cAGcCGCGCGAUGAgU-CGAGcGCGGCg -3'
miRNA:   3'- -UCcGCGCGCUGCUgAuGUUCuCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 25758 0.68 0.465776
Target:  5'- uGGGCGCGCugcugGGCGGCgGCAAcGAuggccGCGAUg -3'
miRNA:   3'- -UCCGCGCG-----CUGCUGaUGUU-CU-----CGCUG- -5'
26519 5' -56.1 NC_005357.1 + 7173 0.68 0.465776
Target:  5'- cGGGCGCuuGuCGGauuCGGGGGCGACg -3'
miRNA:   3'- -UCCGCGcgCuGCUgauGUUCUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 32089 0.68 0.464758
Target:  5'- aAGGCacacgccGCaGCGACGGCUACGGccuGGCGAa -3'
miRNA:   3'- -UCCG-------CG-CGCUGCUGAUGUUc--UCGCUg -5'
26519 5' -56.1 NC_005357.1 + 13084 0.68 0.44565
Target:  5'- cGGCGCGUgguucGAgGACUugGccGGCGACc -3'
miRNA:   3'- uCCGCGCG-----CUgCUGAugUucUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 10027 0.68 0.442673
Target:  5'- uGGCGCGCGGCuuuuuuucggugcuGGCUuccuGCu-GGGCGGCc -3'
miRNA:   3'- uCCGCGCGCUG--------------CUGA----UGuuCUCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.