miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26519 5' -56.1 NC_005357.1 + 1085 0.67 0.539575
Target:  5'- cGGCGCGCGuacuucauguugGCGGCggu-AG-GCGGCa -3'
miRNA:   3'- uCCGCGCGC------------UGCUGauguUCuCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 3508 0.69 0.406912
Target:  5'- cAGaGCGCaGCG-CGAgaACccGAGAGCGACg -3'
miRNA:   3'- -UC-CGCG-CGCuGCUgaUG--UUCUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 4043 0.7 0.361573
Target:  5'- cGGC-CGCGGCGAgcgGCAGGccAGCGGCc -3'
miRNA:   3'- uCCGcGCGCUGCUga-UGUUC--UCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 4808 0.68 0.486363
Target:  5'- uGGCGCuGCGG-GAUUGCuGGccGGCGACa -3'
miRNA:   3'- uCCGCG-CGCUgCUGAUGuUC--UCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 5431 0.7 0.352937
Target:  5'- cGGCGCG-GAUGGCgGCGuGGGCGAg -3'
miRNA:   3'- uCCGCGCgCUGCUGaUGUuCUCGCUg -5'
26519 5' -56.1 NC_005357.1 + 6293 0.66 0.580183
Target:  5'- gGGGCGC-CGG-GGCUuaucuccggugcguGCAAGAcGCGGCg -3'
miRNA:   3'- -UCCGCGcGCUgCUGA--------------UGUUCU-CGCUG- -5'
26519 5' -56.1 NC_005357.1 + 6624 0.7 0.361573
Target:  5'- cGGGCGCGUGGCG-CUGCGc--GCgGACa -3'
miRNA:   3'- -UCCGCGCGCUGCuGAUGUucuCG-CUG- -5'
26519 5' -56.1 NC_005357.1 + 7173 0.68 0.465776
Target:  5'- cGGGCGCuuGuCGGauuCGGGGGCGACg -3'
miRNA:   3'- -UCCGCGcgCuGCUgauGUUCUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 8557 0.66 0.605759
Target:  5'- -cGCGC-CGAUGGCgggcagcgACAGGcGCGACa -3'
miRNA:   3'- ucCGCGcGCUGCUGa-------UGUUCuCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 8917 0.66 0.594618
Target:  5'- cGGCGCGCucGAUGGCUuCGGGcGUgGACa -3'
miRNA:   3'- uCCGCGCG--CUGCUGAuGUUCuCG-CUG- -5'
26519 5' -56.1 NC_005357.1 + 9210 0.66 0.572441
Target:  5'- cGGCgGCGCGGCGcacguuCUGCGGcgcgcccGGCGGCa -3'
miRNA:   3'- uCCG-CGCGCUGCu-----GAUGUUc------UCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 9323 0.7 0.344448
Target:  5'- cGGCGCaCGuCGGCgcgGCGGGcGGCGGCa -3'
miRNA:   3'- uCCGCGcGCuGCUGa--UGUUC-UCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 9895 0.71 0.327914
Target:  5'- cAGGCGCGUGGCGAUguc--GAGCuGCa -3'
miRNA:   3'- -UCCGCGCGCUGCUGauguuCUCGcUG- -5'
26519 5' -56.1 NC_005357.1 + 10027 0.68 0.442673
Target:  5'- uGGCGCGCGGCuuuuuuucggugcuGGCUuccuGCu-GGGCGGCc -3'
miRNA:   3'- uCCGCGCGCUG--------------CUGA----UGuuCUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 10070 0.68 0.476014
Target:  5'- cGGgGCcucgGCGGCGACcGCAGcgaccuGGGCGGCg -3'
miRNA:   3'- uCCgCG----CGCUGCUGaUGUU------CUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 13084 0.68 0.44565
Target:  5'- cGGCGCGUgguucGAgGACUugGccGGCGACc -3'
miRNA:   3'- uCCGCGCG-----CUgCUGAugUucUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 13623 0.69 0.406912
Target:  5'- cGGCGCGCuGGCuGCU-CAAGAuCGGCa -3'
miRNA:   3'- uCCGCGCG-CUGcUGAuGUUCUcGCUG- -5'
26519 5' -56.1 NC_005357.1 + 14425 0.66 0.572441
Target:  5'- cAGGCGCGCcuGCGGC-ACcguguuGGGCGAa -3'
miRNA:   3'- -UCCGCGCGc-UGCUGaUGuu----CUCGCUg -5'
26519 5' -56.1 NC_005357.1 + 14619 0.69 0.426019
Target:  5'- cAGcGCGCGCGAgGACgUGCu---GCGGCu -3'
miRNA:   3'- -UC-CGCGCGCUgCUG-AUGuucuCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 14649 0.71 0.31987
Target:  5'- cGGCGCGCGcuuCGugUACGuguccGAGCcgGACg -3'
miRNA:   3'- uCCGCGCGCu--GCugAUGUu----CUCG--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.