miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26519 5' -56.1 NC_005357.1 + 14741 0.67 0.518021
Target:  5'- cGGCGCGCGGCcuguauuccaaGACcACGguGGAGgUGGCg -3'
miRNA:   3'- uCCGCGCGCUG-----------CUGaUGU--UCUC-GCUG- -5'
26519 5' -56.1 NC_005357.1 + 14962 0.66 0.594618
Target:  5'- uGGUGCGUGGCGGCgcgcugGCAuaccAGCGcCa -3'
miRNA:   3'- uCCGCGCGCUGCUGa-----UGUuc--UCGCuG- -5'
26519 5' -56.1 NC_005357.1 + 15024 1.1 0.00048
Target:  5'- cAGGCGCGCGACGACUACAAGAGCGACa -3'
miRNA:   3'- -UCCGCGCGCUGCUGAUGUUCUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 15150 0.72 0.292143
Target:  5'- aAGGCGCGCGGCGAacugcgguucauugcCUcggcCAAGAGCcuggGGCg -3'
miRNA:   3'- -UCCGCGCGCUGCU---------------GAu---GUUCUCG----CUG- -5'
26519 5' -56.1 NC_005357.1 + 15279 0.66 0.605759
Target:  5'- cGGCGCGUgGGgGACUuCGAGugaugcgcGCGGCg -3'
miRNA:   3'- uCCGCGCG-CUgCUGAuGUUCu-------CGCUG- -5'
26519 5' -56.1 NC_005357.1 + 16456 0.68 0.469858
Target:  5'- cGGCGaggaaaccgaggaauCGgaCGACGGCUACAAGgucaagcgcGGCGACa -3'
miRNA:   3'- uCCGC---------------GC--GCUGCUGAUGUUC---------UCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 16470 0.67 0.539575
Target:  5'- cGGGgGCGUGACGGacagguCGGGcGCGAUa -3'
miRNA:   3'- -UCCgCGCGCUGCUgau---GUUCuCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 20261 0.67 0.528757
Target:  5'- uGGUGCGCGAauuCGGCaaggACAAGuGCaGCa -3'
miRNA:   3'- uCCGCGCGCU---GCUGa---UGUUCuCGcUG- -5'
26519 5' -56.1 NC_005357.1 + 20363 0.67 0.550466
Target:  5'- -cGCGCGCcgaccGCGACccgaGCAAGcGCGACg -3'
miRNA:   3'- ucCGCGCGc----UGCUGa---UGUUCuCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 20590 0.74 0.205394
Target:  5'- aAGGCGCagGCcauCGACUACAAGAGCa-- -3'
miRNA:   3'- -UCCGCG--CGcu-GCUGAUGUUCUCGcug -5'
26519 5' -56.1 NC_005357.1 + 21660 0.68 0.465776
Target:  5'- cAGcCGCGCGAUGAgU-CGAGcGCGGCg -3'
miRNA:   3'- -UCcGCGCGCUGCUgAuGUUCuCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 22228 0.68 0.476014
Target:  5'- cGGGCGCuGCcaaGAC--CGAGGGCGACg -3'
miRNA:   3'- -UCCGCG-CGcugCUGauGUUCUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 22554 0.66 0.605759
Target:  5'- aAGGCGCGCGACGcCUucgGCAcGccCGAa -3'
miRNA:   3'- -UCCGCGCGCUGCuGA---UGUuCucGCUg -5'
26519 5' -56.1 NC_005357.1 + 23748 0.69 0.426019
Target:  5'- gAGGCcCGCGugGugUaACAGGccgggggcgGGCGACc -3'
miRNA:   3'- -UCCGcGCGCugCugA-UGUUC---------UCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 24014 0.66 0.572441
Target:  5'- uGGGCGCGuCGGCcaauuCaGCGAaGGCGACg -3'
miRNA:   3'- -UCCGCGC-GCUGcu---GaUGUUcUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 24557 0.67 0.496818
Target:  5'- -cGCaGCGCGGCGAUgGCGAGGcCGGCc -3'
miRNA:   3'- ucCG-CGCGCUGCUGaUGUUCUcGCUG- -5'
26519 5' -56.1 NC_005357.1 + 24987 0.66 0.561425
Target:  5'- uGGCcucgaugcugGCGgGGCcACUGCucAAGGGCGACg -3'
miRNA:   3'- uCCG----------CGCgCUGcUGAUG--UUCUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 25758 0.68 0.465776
Target:  5'- uGGGCGCGCugcugGGCGGCgGCAAcGAuggccGCGAUg -3'
miRNA:   3'- -UCCGCGCG-----CUGCUGaUGUU-CU-----CGCUG- -5'
26519 5' -56.1 NC_005357.1 + 25863 0.66 0.572441
Target:  5'- cGGCGCGUcGCG-CUACAacgucuauaaGGAGCaaGGCg -3'
miRNA:   3'- uCCGCGCGcUGCuGAUGU----------UCUCG--CUG- -5'
26519 5' -56.1 NC_005357.1 + 26135 0.66 0.605759
Target:  5'- -cGUGCGCGACGACgacCGGGuagccuuccgGGUGGCc -3'
miRNA:   3'- ucCGCGCGCUGCUGau-GUUC----------UCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.