Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26519 | 5' | -56.1 | NC_005357.1 | + | 26369 | 0.69 | 0.397562 |
Target: 5'- -cGCGCGCGGCGGCcACGuGcGCGAa -3' miRNA: 3'- ucCGCGCGCUGCUGaUGUuCuCGCUg -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 26814 | 0.67 | 0.53849 |
Target: 5'- uAGGCGUGCuguuuuuGGCaGGCUGCGccgccccgauGGAGCGGg -3' miRNA: 3'- -UCCGCGCG-------CUG-CUGAUGU----------UCUCGCUg -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 31237 | 0.83 | 0.043552 |
Target: 5'- cGGCGCGCGGCccaGCUACGAGccgGGCGACg -3' miRNA: 3'- uCCGCGCGCUGc--UGAUGUUC---UCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 31686 | 0.67 | 0.539575 |
Target: 5'- cGaGCGCGCccuuGGCGAgCaGCAAG-GCGACg -3' miRNA: 3'- uC-CGCGCG----CUGCU-GaUGUUCuCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 31895 | 0.66 | 0.561425 |
Target: 5'- -uGCGCGUGGCGGCggaAAGcGUGGCc -3' miRNA: 3'- ucCGCGCGCUGCUGaugUUCuCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 31960 | 0.72 | 0.260851 |
Target: 5'- cGGUGCuGCG-CGACUuCcAGGGCGACg -3' miRNA: 3'- uCCGCG-CGCuGCUGAuGuUCUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 32089 | 0.68 | 0.464758 |
Target: 5'- aAGGCacacgccGCaGCGACGGCUACGGccuGGCGAa -3' miRNA: 3'- -UCCG-------CG-CGCUGCUGAUGUUc--UCGCUg -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 33731 | 0.67 | 0.539575 |
Target: 5'- cGGCagcaaucuGCGCGGCGcAC-ACcuGGGCGGCg -3' miRNA: 3'- uCCG--------CGCGCUGC-UGaUGuuCUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 34378 | 0.77 | 0.135602 |
Target: 5'- uGGGCGCGCgucaugGACGGCgGCAAGgacGGCGGCc -3' miRNA: 3'- -UCCGCGCG------CUGCUGaUGUUC---UCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 34774 | 0.72 | 0.281879 |
Target: 5'- cGGCGCGUGuACGGCa--AGGAGcCGGCg -3' miRNA: 3'- uCCGCGCGC-UGCUGaugUUCUC-GCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 35874 | 0.67 | 0.550466 |
Target: 5'- aAGGaUGCGCuGACGcCUgGCGAuucGGGCGACg -3' miRNA: 3'- -UCC-GCGCG-CUGCuGA-UGUU---CUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 35953 | 0.67 | 0.496818 |
Target: 5'- cGGGCcuGCGCGGCGugcaguucCUGCGcGAcgGCGACg -3' miRNA: 3'- -UCCG--CGCGCUGCu-------GAUGUuCU--CGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 36345 | 0.69 | 0.397562 |
Target: 5'- aAGGcCGCGCucGACGACUuCGAG-GCGGu -3' miRNA: 3'- -UCC-GCGCG--CUGCUGAuGUUCuCGCUg -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 36889 | 0.67 | 0.518021 |
Target: 5'- uGGCGgGCGACcugGGCggaACcuGGGCGGCc -3' miRNA: 3'- uCCGCgCGCUG---CUGa--UGuuCUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 37070 | 0.66 | 0.561425 |
Target: 5'- uGGGCGCGgugcaGGCGGCcACGcAGcGCGAUg -3' miRNA: 3'- -UCCGCGCg----CUGCUGaUGU-UCuCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 37274 | 0.69 | 0.397562 |
Target: 5'- aGGGCGUgagcaGCGACGGCcGCcuGcGCGGCa -3' miRNA: 3'- -UCCGCG-----CGCUGCUGaUGuuCuCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 37656 | 0.67 | 0.550466 |
Target: 5'- uGGGCGCaGUGugGGCgaacgcCGAGAacaucGCGGCc -3' miRNA: 3'- -UCCGCG-CGCugCUGau----GUUCU-----CGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 38517 | 0.66 | 0.572441 |
Target: 5'- uGGGgGCGCGGCca-UGCGugaaAGCGACa -3' miRNA: 3'- -UCCgCGCGCUGcugAUGUuc--UCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 38547 | 0.68 | 0.435771 |
Target: 5'- cGGCG-GCGACGGCaGCGcGGccuacAGCGACg -3' miRNA: 3'- uCCGCgCGCUGCUGaUGU-UC-----UCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 38979 | 0.7 | 0.339426 |
Target: 5'- gGGGCGCGCGGCGuCUGugaccaccugauucuUGAGuAGCGGg -3' miRNA: 3'- -UCCGCGCGCUGCuGAU---------------GUUC-UCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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