miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26519 5' -56.1 NC_005357.1 + 42243 0.66 0.561425
Target:  5'- cGGCaGCGUGACGG-UGCcc-AGCGACa -3'
miRNA:   3'- uCCG-CGCGCUGCUgAUGuucUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 41978 0.66 0.572441
Target:  5'- uGGUGCGCGGCGA--GCAGaAG-GACa -3'
miRNA:   3'- uCCGCGCGCUGCUgaUGUUcUCgCUG- -5'
26519 5' -56.1 NC_005357.1 + 40339 0.73 0.234202
Target:  5'- uGGGCGCGCuacaugGACGACaucguggUGCu-GGGCGACg -3'
miRNA:   3'- -UCCGCGCG------CUGCUG-------AUGuuCUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 38979 0.7 0.339426
Target:  5'- gGGGCGCGCGGCGuCUGugaccaccugauucuUGAGuAGCGGg -3'
miRNA:   3'- -UCCGCGCGCUGCuGAU---------------GUUC-UCGCUg -5'
26519 5' -56.1 NC_005357.1 + 38547 0.68 0.435771
Target:  5'- cGGCG-GCGACGGCaGCGcGGccuacAGCGACg -3'
miRNA:   3'- uCCGCgCGCUGCUGaUGU-UC-----UCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 38517 0.66 0.572441
Target:  5'- uGGGgGCGCGGCca-UGCGugaaAGCGACa -3'
miRNA:   3'- -UCCgCGCGCUGcugAUGUuc--UCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 37656 0.67 0.550466
Target:  5'- uGGGCGCaGUGugGGCgaacgcCGAGAacaucGCGGCc -3'
miRNA:   3'- -UCCGCG-CGCugCUGau----GUUCU-----CGCUG- -5'
26519 5' -56.1 NC_005357.1 + 37274 0.69 0.397562
Target:  5'- aGGGCGUgagcaGCGACGGCcGCcuGcGCGGCa -3'
miRNA:   3'- -UCCGCG-----CGCUGCUGaUGuuCuCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 37070 0.66 0.561425
Target:  5'- uGGGCGCGgugcaGGCGGCcACGcAGcGCGAUg -3'
miRNA:   3'- -UCCGCGCg----CUGCUGaUGU-UCuCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 36889 0.67 0.518021
Target:  5'- uGGCGgGCGACcugGGCggaACcuGGGCGGCc -3'
miRNA:   3'- uCCGCgCGCUG---CUGa--UGuuCUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 36345 0.69 0.397562
Target:  5'- aAGGcCGCGCucGACGACUuCGAG-GCGGu -3'
miRNA:   3'- -UCC-GCGCG--CUGCUGAuGUUCuCGCUg -5'
26519 5' -56.1 NC_005357.1 + 35953 0.67 0.496818
Target:  5'- cGGGCcuGCGCGGCGugcaguucCUGCGcGAcgGCGACg -3'
miRNA:   3'- -UCCG--CGCGCUGCu-------GAUGUuCU--CGCUG- -5'
26519 5' -56.1 NC_005357.1 + 35874 0.67 0.550466
Target:  5'- aAGGaUGCGCuGACGcCUgGCGAuucGGGCGACg -3'
miRNA:   3'- -UCC-GCGCG-CUGCuGA-UGUU---CUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 34774 0.72 0.281879
Target:  5'- cGGCGCGUGuACGGCa--AGGAGcCGGCg -3'
miRNA:   3'- uCCGCGCGC-UGCUGaugUUCUC-GCUG- -5'
26519 5' -56.1 NC_005357.1 + 34378 0.77 0.135602
Target:  5'- uGGGCGCGCgucaugGACGGCgGCAAGgacGGCGGCc -3'
miRNA:   3'- -UCCGCGCG------CUGCUGaUGUUC---UCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 33731 0.67 0.539575
Target:  5'- cGGCagcaaucuGCGCGGCGcAC-ACcuGGGCGGCg -3'
miRNA:   3'- uCCG--------CGCGCUGC-UGaUGuuCUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 32089 0.68 0.464758
Target:  5'- aAGGCacacgccGCaGCGACGGCUACGGccuGGCGAa -3'
miRNA:   3'- -UCCG-------CG-CGCUGCUGAUGUUc--UCGCUg -5'
26519 5' -56.1 NC_005357.1 + 31960 0.72 0.260851
Target:  5'- cGGUGCuGCG-CGACUuCcAGGGCGACg -3'
miRNA:   3'- uCCGCG-CGCuGCUGAuGuUCUCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 31895 0.66 0.561425
Target:  5'- -uGCGCGUGGCGGCggaAAGcGUGGCc -3'
miRNA:   3'- ucCGCGCGCUGCUGaugUUCuCGCUG- -5'
26519 5' -56.1 NC_005357.1 + 31686 0.67 0.539575
Target:  5'- cGaGCGCGCccuuGGCGAgCaGCAAG-GCGACg -3'
miRNA:   3'- uC-CGCGCG----CUGCU-GaUGUUCuCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.