Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26519 | 5' | -56.1 | NC_005357.1 | + | 31237 | 0.83 | 0.043552 |
Target: 5'- cGGCGCGCGGCccaGCUACGAGccgGGCGACg -3' miRNA: 3'- uCCGCGCGCUGc--UGAUGUUC---UCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 26814 | 0.67 | 0.53849 |
Target: 5'- uAGGCGUGCuguuuuuGGCaGGCUGCGccgccccgauGGAGCGGg -3' miRNA: 3'- -UCCGCGCG-------CUG-CUGAUGU----------UCUCGCUg -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 26369 | 0.69 | 0.397562 |
Target: 5'- -cGCGCGCGGCGGCcACGuGcGCGAa -3' miRNA: 3'- ucCGCGCGCUGCUGaUGUuCuCGCUg -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 26135 | 0.66 | 0.605759 |
Target: 5'- -cGUGCGCGACGACgacCGGGuagccuuccgGGUGGCc -3' miRNA: 3'- ucCGCGCGCUGCUGau-GUUC----------UCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 25863 | 0.66 | 0.572441 |
Target: 5'- cGGCGCGUcGCG-CUACAacgucuauaaGGAGCaaGGCg -3' miRNA: 3'- uCCGCGCGcUGCuGAUGU----------UCUCG--CUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 25758 | 0.68 | 0.465776 |
Target: 5'- uGGGCGCGCugcugGGCGGCgGCAAcGAuggccGCGAUg -3' miRNA: 3'- -UCCGCGCG-----CUGCUGaUGUU-CU-----CGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 24987 | 0.66 | 0.561425 |
Target: 5'- uGGCcucgaugcugGCGgGGCcACUGCucAAGGGCGACg -3' miRNA: 3'- uCCG----------CGCgCUGcUGAUG--UUCUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 24557 | 0.67 | 0.496818 |
Target: 5'- -cGCaGCGCGGCGAUgGCGAGGcCGGCc -3' miRNA: 3'- ucCG-CGCGCUGCUGaUGUUCUcGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 24014 | 0.66 | 0.572441 |
Target: 5'- uGGGCGCGuCGGCcaauuCaGCGAaGGCGACg -3' miRNA: 3'- -UCCGCGC-GCUGcu---GaUGUUcUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 23748 | 0.69 | 0.426019 |
Target: 5'- gAGGCcCGCGugGugUaACAGGccgggggcgGGCGACc -3' miRNA: 3'- -UCCGcGCGCugCugA-UGUUC---------UCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 22554 | 0.66 | 0.605759 |
Target: 5'- aAGGCGCGCGACGcCUucgGCAcGccCGAa -3' miRNA: 3'- -UCCGCGCGCUGCuGA---UGUuCucGCUg -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 22228 | 0.68 | 0.476014 |
Target: 5'- cGGGCGCuGCcaaGAC--CGAGGGCGACg -3' miRNA: 3'- -UCCGCG-CGcugCUGauGUUCUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 21660 | 0.68 | 0.465776 |
Target: 5'- cAGcCGCGCGAUGAgU-CGAGcGCGGCg -3' miRNA: 3'- -UCcGCGCGCUGCUgAuGUUCuCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 20590 | 0.74 | 0.205394 |
Target: 5'- aAGGCGCagGCcauCGACUACAAGAGCa-- -3' miRNA: 3'- -UCCGCG--CGcu-GCUGAUGUUCUCGcug -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 20363 | 0.67 | 0.550466 |
Target: 5'- -cGCGCGCcgaccGCGACccgaGCAAGcGCGACg -3' miRNA: 3'- ucCGCGCGc----UGCUGa---UGUUCuCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 20261 | 0.67 | 0.528757 |
Target: 5'- uGGUGCGCGAauuCGGCaaggACAAGuGCaGCa -3' miRNA: 3'- uCCGCGCGCU---GCUGa---UGUUCuCGcUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 16470 | 0.67 | 0.539575 |
Target: 5'- cGGGgGCGUGACGGacagguCGGGcGCGAUa -3' miRNA: 3'- -UCCgCGCGCUGCUgau---GUUCuCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 16456 | 0.68 | 0.469858 |
Target: 5'- cGGCGaggaaaccgaggaauCGgaCGACGGCUACAAGgucaagcgcGGCGACa -3' miRNA: 3'- uCCGC---------------GC--GCUGCUGAUGUUC---------UCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 15279 | 0.66 | 0.605759 |
Target: 5'- cGGCGCGUgGGgGACUuCGAGugaugcgcGCGGCg -3' miRNA: 3'- uCCGCGCG-CUgCUGAuGUUCu-------CGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 15150 | 0.72 | 0.292143 |
Target: 5'- aAGGCGCGCGGCGAacugcgguucauugcCUcggcCAAGAGCcuggGGCg -3' miRNA: 3'- -UCCGCGCGCUGCU---------------GAu---GUUCUCG----CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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