Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26519 | 5' | -56.1 | NC_005357.1 | + | 15024 | 1.1 | 0.00048 |
Target: 5'- cAGGCGCGCGACGACUACAAGAGCGACa -3' miRNA: 3'- -UCCGCGCGCUGCUGAUGUUCUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 20363 | 0.67 | 0.550466 |
Target: 5'- -cGCGCGCcgaccGCGACccgaGCAAGcGCGACg -3' miRNA: 3'- ucCGCGCGc----UGCUGa---UGUUCuCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 20261 | 0.67 | 0.528757 |
Target: 5'- uGGUGCGCGAauuCGGCaaggACAAGuGCaGCa -3' miRNA: 3'- uCCGCGCGCU---GCUGa---UGUUCuCGcUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 22228 | 0.68 | 0.476014 |
Target: 5'- cGGGCGCuGCcaaGAC--CGAGGGCGACg -3' miRNA: 3'- -UCCGCG-CGcugCUGauGUUCUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 14962 | 0.66 | 0.594618 |
Target: 5'- uGGUGCGUGGCGGCgcgcugGCAuaccAGCGcCa -3' miRNA: 3'- uCCGCGCGCUGCUGa-----UGUuc--UCGCuG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 42243 | 0.66 | 0.561425 |
Target: 5'- cGGCaGCGUGACGG-UGCcc-AGCGACa -3' miRNA: 3'- uCCG-CGCGCUGCUgAUGuucUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 35874 | 0.67 | 0.550466 |
Target: 5'- aAGGaUGCGCuGACGcCUgGCGAuucGGGCGACg -3' miRNA: 3'- -UCC-GCGCG-CUGCuGA-UGUU---CUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 10070 | 0.68 | 0.476014 |
Target: 5'- cGGgGCcucgGCGGCGACcGCAGcgaccuGGGCGGCg -3' miRNA: 3'- uCCgCG----CGCUGCUGaUGUU------CUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 31895 | 0.66 | 0.561425 |
Target: 5'- -uGCGCGUGGCGGCggaAAGcGUGGCc -3' miRNA: 3'- ucCGCGCGCUGCUGaugUUCuCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 16456 | 0.68 | 0.469858 |
Target: 5'- cGGCGaggaaaccgaggaauCGgaCGACGGCUACAAGgucaagcgcGGCGACa -3' miRNA: 3'- uCCGC---------------GC--GCUGCUGAUGUUC---------UCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 37656 | 0.67 | 0.550466 |
Target: 5'- uGGGCGCaGUGugGGCgaacgcCGAGAacaucGCGGCc -3' miRNA: 3'- -UCCGCG-CGCugCUGau----GUUCU-----CGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 24987 | 0.66 | 0.561425 |
Target: 5'- uGGCcucgaugcugGCGgGGCcACUGCucAAGGGCGACg -3' miRNA: 3'- uCCG----------CGCgCUGcUGAUG--UUCUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 31686 | 0.67 | 0.539575 |
Target: 5'- cGaGCGCGCccuuGGCGAgCaGCAAG-GCGACg -3' miRNA: 3'- uC-CGCGCG----CUGCU-GaUGUUCuCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 1085 | 0.67 | 0.539575 |
Target: 5'- cGGCGCGCGuacuucauguugGCGGCggu-AG-GCGGCa -3' miRNA: 3'- uCCGCGCGC------------UGCUGauguUCuCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 14741 | 0.67 | 0.518021 |
Target: 5'- cGGCGCGCGGCcuguauuccaaGACcACGguGGAGgUGGCg -3' miRNA: 3'- uCCGCGCGCUG-----------CUGaUGU--UCUC-GCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 36889 | 0.67 | 0.518021 |
Target: 5'- uGGCGgGCGACcugGGCggaACcuGGGCGGCc -3' miRNA: 3'- uCCGCgCGCUG---CUGa--UGuuCUCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 26135 | 0.66 | 0.605759 |
Target: 5'- -cGUGCGCGACGACgacCGGGuagccuuccgGGUGGCc -3' miRNA: 3'- ucCGCGCGCUGCUGau-GUUC----------UCGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 15279 | 0.66 | 0.605759 |
Target: 5'- cGGCGCGUgGGgGACUuCGAGugaugcgcGCGGCg -3' miRNA: 3'- uCCGCGCG-CUgCUGAuGUUCu-------CGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 6293 | 0.66 | 0.580183 |
Target: 5'- gGGGCGC-CGG-GGCUuaucuccggugcguGCAAGAcGCGGCg -3' miRNA: 3'- -UCCGCGcGCUgCUGA--------------UGUUCU-CGCUG- -5' |
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26519 | 5' | -56.1 | NC_005357.1 | + | 25863 | 0.66 | 0.572441 |
Target: 5'- cGGCGCGUcGCG-CUACAacgucuauaaGGAGCaaGGCg -3' miRNA: 3'- uCCGCGCGcUGCuGAUGU----------UCUCG--CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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