miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2652 3' -47.1 NC_001491.2 + 113123 0.66 0.999816
Target:  5'- aGCggGUAUUugcguGCUCU-GAAACCcaucGCCa -3'
miRNA:   3'- -CGuaCGUAAu----CGAGAuCUUUGGa---CGG- -5'
2652 3' -47.1 NC_001491.2 + 126506 0.66 0.999762
Target:  5'- uGCGUGCAUgcGCaccUUUAcGGACCUugGCCg -3'
miRNA:   3'- -CGUACGUAauCG---AGAUcUUUGGA--CGG- -5'
2652 3' -47.1 NC_001491.2 + 2841 0.67 0.999513
Target:  5'- cGCcgGCuccaggGGCUC-GGAGcgccGCUUGCCg -3'
miRNA:   3'- -CGuaCGuaa---UCGAGaUCUU----UGGACGG- -5'
2652 3' -47.1 NC_001491.2 + 39363 0.67 0.999513
Target:  5'- cCAUGC---GGC-CUAGAugcAGCCUGCg -3'
miRNA:   3'- cGUACGuaaUCGaGAUCU---UUGGACGg -5'
2652 3' -47.1 NC_001491.2 + 61467 0.67 0.999044
Target:  5'- cGCAaauauuUGCuucugUGGCUaggaggcugcuguUUAGAAGCCUGUCa -3'
miRNA:   3'- -CGU------ACGua---AUCGA-------------GAUCUUUGGACGG- -5'
2652 3' -47.1 NC_001491.2 + 125934 0.67 0.998849
Target:  5'- cGC-UGCAccGGCUCccagAGggGCUgcaUGCCa -3'
miRNA:   3'- -CGuACGUaaUCGAGa---UCuuUGG---ACGG- -5'
2652 3' -47.1 NC_001491.2 + 146709 0.68 0.998295
Target:  5'- -gGUGCGUggAGCUCUGGG--UCUGgCCc -3'
miRNA:   3'- cgUACGUAa-UCGAGAUCUuuGGAC-GG- -5'
2652 3' -47.1 NC_001491.2 + 38291 0.68 0.997904
Target:  5'- cGUGUGUAUUAcGCgCUGGAuacgacaaaacccGACCUGUCc -3'
miRNA:   3'- -CGUACGUAAU-CGaGAUCU-------------UUGGACGG- -5'
2652 3' -47.1 NC_001491.2 + 6391 0.69 0.997053
Target:  5'- gGCGUGUAgcGGCUCUAgccuauGggGCCcgGUCc -3'
miRNA:   3'- -CGUACGUaaUCGAGAU------CuuUGGa-CGG- -5'
2652 3' -47.1 NC_001491.2 + 119537 0.69 0.995865
Target:  5'- uGCuAUGC--UGGCUCUaauggaAGAGGCCggGCCc -3'
miRNA:   3'- -CG-UACGuaAUCGAGA------UCUUUGGa-CGG- -5'
2652 3' -47.1 NC_001491.2 + 59394 0.78 0.757979
Target:  5'- -gAUGCAgccgacaaguagUAGCUCUAGuaguGCCUGCCc -3'
miRNA:   3'- cgUACGUa-----------AUCGAGAUCuu--UGGACGG- -5'
2652 3' -47.1 NC_001491.2 + 99836 1.15 0.008259
Target:  5'- gGCAUGCAUUAGCUCUAGAAACCUGCCc -3'
miRNA:   3'- -CGUACGUAAUCGAGAUCUUUGGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.