miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2652 5' -64.7 NC_001491.2 + 99549 0.67 0.439085
Target:  5'- gUGGcgccuaaGCAGcaGUCCCGCguccuuaauaaaCGCCGCgCACGCg -3'
miRNA:   3'- -ACC-------CGUC--CAGGGCG------------GCGGUGgGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 31356 0.67 0.439085
Target:  5'- gGGGCGuGGUuaccaCCCaagcgggggagagGCCcagGCCGCCCGCGUu -3'
miRNA:   3'- aCCCGU-CCA-----GGG-------------CGG---CGGUGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 69340 0.67 0.439085
Target:  5'- aUGGGaCAGGgcuauuggCCCGaguuugaaguaccCCGCCAUCaGCGCg -3'
miRNA:   3'- -ACCC-GUCCa-------GGGC-------------GGCGGUGGgUGCG- -5'
2652 5' -64.7 NC_001491.2 + 2688 0.68 0.425578
Target:  5'- gGGGCccucggcuggcauGGGUCCCagggcccggggaGCCugguggcccggggugGCCACCCuGCGCu -3'
miRNA:   3'- aCCCG-------------UCCAGGG------------CGG---------------CGGUGGG-UGCG- -5'
2652 5' -64.7 NC_001491.2 + 25753 0.68 0.414787
Target:  5'- gGGGcCAGGcagcCCCGCaGCCGCgCgCACGUg -3'
miRNA:   3'- aCCC-GUCCa---GGGCGgCGGUG-G-GUGCG- -5'
2652 5' -64.7 NC_001491.2 + 35772 0.68 0.390539
Target:  5'- cUGGuGCugcccaucaccgAGGcucCCCGCCGCCgaGCCC-CGCg -3'
miRNA:   3'- -ACC-CG------------UCCa--GGGCGGCGG--UGGGuGCG- -5'
2652 5' -64.7 NC_001491.2 + 100069 0.68 0.390539
Target:  5'- cGGcGCAGGUucuUCCGCgGCUGCgUACGUg -3'
miRNA:   3'- aCC-CGUCCA---GGGCGgCGGUGgGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 10041 0.68 0.382665
Target:  5'- cGGcGCAcgcGGUCUCGCUGCCGCgCUcCGUg -3'
miRNA:   3'- aCC-CGU---CCAGGGCGGCGGUG-GGuGCG- -5'
2652 5' -64.7 NC_001491.2 + 141754 0.68 0.382665
Target:  5'- aGaGGCGGGUUCCGCUGggcaugcuUCACCUcgcaauGCGCg -3'
miRNA:   3'- aC-CCGUCCAGGGCGGC--------GGUGGG------UGCG- -5'
2652 5' -64.7 NC_001491.2 + 8446 0.69 0.367237
Target:  5'- gGGGCGugcgacGGaUCCUGCCGCaugGCCCA-GCg -3'
miRNA:   3'- aCCCGU------CC-AGGGCGGCGg--UGGGUgCG- -5'
2652 5' -64.7 NC_001491.2 + 3699 0.69 0.359685
Target:  5'- cUGGGCGcccuGGUCCCcggaGCgGCCGCggCCGCGg -3'
miRNA:   3'- -ACCCGU----CCAGGG----CGgCGGUG--GGUGCg -5'
2652 5' -64.7 NC_001491.2 + 54445 0.69 0.336969
Target:  5'- aUGGGCuccgcacGGGcUCCCGa-GCUAUCCACGUa -3'
miRNA:   3'- -ACCCG-------UCC-AGGGCggCGGUGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 24744 0.7 0.309903
Target:  5'- gGGacccGCGGGcgCCCGCCGCC-CgCCGgGCg -3'
miRNA:   3'- aCC----CGUCCa-GGGCGGCGGuG-GGUgCG- -5'
2652 5' -64.7 NC_001491.2 + 69782 0.7 0.303235
Target:  5'- aGGGCGucGGUgUCGaCgGCCACUCugGCg -3'
miRNA:   3'- aCCCGU--CCAgGGC-GgCGGUGGGugCG- -5'
2652 5' -64.7 NC_001491.2 + 64333 0.71 0.283895
Target:  5'- cUGGGauGGUCCacaccgGCCGCCACaCACGCc -3'
miRNA:   3'- -ACCCguCCAGGg-----CGGCGGUGgGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 28229 0.71 0.271552
Target:  5'- aGGGCGa--CUCGUCGCCGCUCACGUc -3'
miRNA:   3'- aCCCGUccaGGGCGGCGGUGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 92262 0.71 0.271552
Target:  5'- aGGcGCuGG-CCaUGCCgGCCACCCugGCu -3'
miRNA:   3'- aCC-CGuCCaGG-GCGG-CGGUGGGugCG- -5'
2652 5' -64.7 NC_001491.2 + 136040 0.71 0.26614
Target:  5'- aGGGCGGGaaccucugggaagggCUCGUCGCCAUgCGCGUu -3'
miRNA:   3'- aCCCGUCCa--------------GGGCGGCGGUGgGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 2191 0.71 0.265544
Target:  5'- gGGGCcccGGUCCaGuuGCCGgCCCAgGCg -3'
miRNA:   3'- aCCCGu--CCAGGgCggCGGU-GGGUgCG- -5'
2652 5' -64.7 NC_001491.2 + 21715 0.72 0.216238
Target:  5'- aGGGUcugGGGUCCUGUgGCCugCCucaGCGUa -3'
miRNA:   3'- aCCCG---UCCAGGGCGgCGGugGG---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.