miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26520 5' -55 NC_005357.1 + 41409 0.65 0.679936
Target:  5'- cCGUGGCCU----UCCAGGuguucgacGCUGCGGUg -3'
miRNA:   3'- -GCGCCGGAcauaAGGUUC--------UGGUGCCA- -5'
26520 5' -55 NC_005357.1 + 2665 0.65 0.679936
Target:  5'- aGCGGUCgcccagGUGUUCgAucaGCCACGGc -3'
miRNA:   3'- gCGCCGGa-----CAUAAGgUuc-UGGUGCCa -5'
26520 5' -55 NC_005357.1 + 19201 0.66 0.668767
Target:  5'- gCGCGGUCgGUGg-CCGAGGCCGaGGc -3'
miRNA:   3'- -GCGCCGGaCAUaaGGUUCUGGUgCCa -5'
26520 5' -55 NC_005357.1 + 856 0.66 0.668767
Target:  5'- cCGUGGCCUGUAUggcuuucguuUCCcuaucgacgAGGGCCGCc-- -3'
miRNA:   3'- -GCGCCGGACAUA----------AGG---------UUCUGGUGcca -5'
26520 5' -55 NC_005357.1 + 7062 0.66 0.668767
Target:  5'- gGCGGCCagGUAcUUCAugacGCCGCGGc -3'
miRNA:   3'- gCGCCGGa-CAUaAGGUuc--UGGUGCCa -5'
26520 5' -55 NC_005357.1 + 11109 0.67 0.601382
Target:  5'- cCGCGaCCUGggAUUCCAgccGGGCCaccacGCGGUc -3'
miRNA:   3'- -GCGCcGGACa-UAAGGU---UCUGG-----UGCCA- -5'
26520 5' -55 NC_005357.1 + 8260 0.67 0.567922
Target:  5'- aGCGGCCcagGUGUUCgaucugacgCAcgcuaucgaccAGGCCGCGGa -3'
miRNA:   3'- gCGCCGGa--CAUAAG---------GU-----------UCUGGUGCCa -5'
26520 5' -55 NC_005357.1 + 9375 0.68 0.555763
Target:  5'- uGCGGCCgcgugcauUGUGcagCCAcugcaugucgcgcAGGCCGCGGg -3'
miRNA:   3'- gCGCCGG--------ACAUaa-GGU-------------UCUGGUGCCa -5'
26520 5' -55 NC_005357.1 + 15115 0.68 0.550261
Target:  5'- aCGCGcGCCUGUGggcgUcgugggaagccuucgCCAAGGCgCGCGGc -3'
miRNA:   3'- -GCGC-CGGACAUa---A---------------GGUUCUG-GUGCCa -5'
26520 5' -55 NC_005357.1 + 25589 0.68 0.534948
Target:  5'- cCGCGGUCUGcGgcCCAGGcaguggcaACCACGGc -3'
miRNA:   3'- -GCGCCGGACaUaaGGUUC--------UGGUGCCa -5'
26520 5' -55 NC_005357.1 + 28090 0.68 0.502675
Target:  5'- cCGCGGCgUcGUAUUCCG---UCGCGGUg -3'
miRNA:   3'- -GCGCCGgA-CAUAAGGUucuGGUGCCA- -5'
26520 5' -55 NC_005357.1 + 34449 0.69 0.481637
Target:  5'- gCGCGGCgacaUGgaaaccacgAUgcgcgCCGAGGCCACGGg -3'
miRNA:   3'- -GCGCCGg---ACa--------UAa----GGUUCUGGUGCCa -5'
26520 5' -55 NC_005357.1 + 37375 0.7 0.421292
Target:  5'- cCGCGGCCUGUGcUCaagCAGGACgccaucgaGCGGg -3'
miRNA:   3'- -GCGCCGGACAUaAG---GUUCUGg-------UGCCa -5'
26520 5' -55 NC_005357.1 + 4895 0.7 0.421292
Target:  5'- gGCGGCCUcg--UUUucGGCCACGGUg -3'
miRNA:   3'- gCGCCGGAcauaAGGuuCUGGUGCCA- -5'
26520 5' -55 NC_005357.1 + 22464 0.7 0.411682
Target:  5'- gGCGGCCUGc---CCGAaACCugGGUu -3'
miRNA:   3'- gCGCCGGACauaaGGUUcUGGugCCA- -5'
26520 5' -55 NC_005357.1 + 37686 0.7 0.40221
Target:  5'- uCGCGGCCgUGg---CCGAGAacaUCGCGGUc -3'
miRNA:   3'- -GCGCCGG-ACauaaGGUUCU---GGUGCCA- -5'
26520 5' -55 NC_005357.1 + 25897 0.7 0.392877
Target:  5'- gGCGGCCUGUAcggCUAuaucggccAGACCAcCGGc -3'
miRNA:   3'- gCGCCGGACAUaa-GGU--------UCUGGU-GCCa -5'
26520 5' -55 NC_005357.1 + 20195 0.71 0.383685
Target:  5'- uCGCGGCCgacaa-CCAGGGCCGCGu- -3'
miRNA:   3'- -GCGCCGGacauaaGGUUCUGGUGCca -5'
26520 5' -55 NC_005357.1 + 33793 0.71 0.365736
Target:  5'- gCGCGGCCUGgggcguUUCCGAagggcguaccGGCCACGc- -3'
miRNA:   3'- -GCGCCGGACau----AAGGUU----------CUGGUGCca -5'
26520 5' -55 NC_005357.1 + 7152 0.71 0.356981
Target:  5'- uGCGGCCUGgaugaCCAGGGCCG-GGc -3'
miRNA:   3'- gCGCCGGACauaa-GGUUCUGGUgCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.