miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26523 3' -55 NC_005357.1 + 22511 0.65 0.700414
Target:  5'- gCCCGCCAUCauccCCGCAgcgagCacgcGCAGCGc -3'
miRNA:   3'- -GGGUGGUAGac--GGCGUa----Ga---UGUCGCc -5'
26523 3' -55 NC_005357.1 + 21441 0.65 0.700414
Target:  5'- gCCCugCAUuucCUGCgGCGgggGCGGCaGGa -3'
miRNA:   3'- -GGGugGUA---GACGgCGUagaUGUCG-CC- -5'
26523 3' -55 NC_005357.1 + 30730 0.66 0.689428
Target:  5'- cCUCGCCAagcggcuaagUCcGCCGCAgUCUgacaccuuggGCAGUGGu -3'
miRNA:   3'- -GGGUGGU----------AGaCGGCGU-AGA----------UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 10672 0.66 0.689428
Target:  5'- gCCGCCGUgUccaGuuGCGUCUugacgGCAGCGc -3'
miRNA:   3'- gGGUGGUAgA---CggCGUAGA-----UGUCGCc -5'
26523 3' -55 NC_005357.1 + 4111 0.66 0.689428
Target:  5'- uUCCGCCA---GCCuGCG-CUGCAGCGu -3'
miRNA:   3'- -GGGUGGUagaCGG-CGUaGAUGUCGCc -5'
26523 3' -55 NC_005357.1 + 7587 0.66 0.688326
Target:  5'- gCCGCCgcguagggucaggGUCUGUC-CGUCUGCcGUGGu -3'
miRNA:   3'- gGGUGG-------------UAGACGGcGUAGAUGuCGCC- -5'
26523 3' -55 NC_005357.1 + 37774 0.66 0.688326
Target:  5'- gCCCGCCAacaaccuguccgaUCuUGCCGaccCUGCGGCa- -3'
miRNA:   3'- -GGGUGGU-------------AG-ACGGCguaGAUGUCGcc -5'
26523 3' -55 NC_005357.1 + 30658 0.66 0.687223
Target:  5'- aCCAauUCGUCggGCCGCuggguguagGCGGCGGg -3'
miRNA:   3'- gGGU--GGUAGa-CGGCGuaga-----UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 11317 0.66 0.686121
Target:  5'- cCCCGCUAUCUcgcaccacucgccgGCCuGCAcCgaggugaGCAGCGGc -3'
miRNA:   3'- -GGGUGGUAGA--------------CGG-CGUaGa------UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 8039 0.66 0.678385
Target:  5'- gCCGCCGUCcuUGCCGcCGUCcaugACGcGCGc -3'
miRNA:   3'- gGGUGGUAG--ACGGC-GUAGa---UGU-CGCc -5'
26523 3' -55 NC_005357.1 + 26160 0.66 0.678385
Target:  5'- gCUCGCCGUCUGCgaugcgguCGCAgauuuCGGUGGc -3'
miRNA:   3'- -GGGUGGUAGACG--------GCGUagau-GUCGCC- -5'
26523 3' -55 NC_005357.1 + 28562 0.66 0.667297
Target:  5'- gCCgGCCAUCgcgGCgCGCAcgUCggccaccgGCAGCGu -3'
miRNA:   3'- -GGgUGGUAGa--CG-GCGU--AGa-------UGUCGCc -5'
26523 3' -55 NC_005357.1 + 25515 0.66 0.667297
Target:  5'- gCCCGCgAugaggucgguUUUGCCGCcgCcgGCAGCGc -3'
miRNA:   3'- -GGGUGgU----------AGACGGCGuaGa-UGUCGCc -5'
26523 3' -55 NC_005357.1 + 25644 0.66 0.645031
Target:  5'- gUCCACCucggcgaguUCUGCCGgCGUCaUGuacgucaucagcCGGCGGa -3'
miRNA:   3'- -GGGUGGu--------AGACGGC-GUAG-AU------------GUCGCC- -5'
26523 3' -55 NC_005357.1 + 11673 0.66 0.645031
Target:  5'- -aCACCA-CUGCCcaagGUGUCagacUGCGGCGGa -3'
miRNA:   3'- ggGUGGUaGACGG----CGUAG----AUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 41428 0.66 0.645031
Target:  5'- cCCgGCCAg-UGgCGCGg--GCAGCGGg -3'
miRNA:   3'- -GGgUGGUagACgGCGUagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 40509 0.66 0.643915
Target:  5'- gCCCACCcacaagCUGCUGCGcaaguccUCggucaAGCGGg -3'
miRNA:   3'- -GGGUGGua----GACGGCGU-------AGaug--UCGCC- -5'
26523 3' -55 NC_005357.1 + 29050 0.67 0.622716
Target:  5'- aCCCACCGgcgGCuCGUAggccauCAGCGGg -3'
miRNA:   3'- -GGGUGGUagaCG-GCGUagau--GUCGCC- -5'
26523 3' -55 NC_005357.1 + 12292 0.67 0.611566
Target:  5'- gCCCAgCG--UGCCGg--CUACGGCGGc -3'
miRNA:   3'- -GGGUgGUagACGGCguaGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 10330 0.67 0.589331
Target:  5'- gCCagGCCGUa-GCCGUcgCUGCGGCGu -3'
miRNA:   3'- gGG--UGGUAgaCGGCGuaGAUGUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.