miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26523 3' -55 NC_005357.1 + 11859 1.12 0.00056
Target:  5'- gCCCACCAUCUGCCGCAUCUACAGCGGc -3'
miRNA:   3'- -GGGUGGUAGACGGCGUAGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 25302 0.76 0.182333
Target:  5'- cCUCGCCAUCUGCCGCAaCUuc-GUGGu -3'
miRNA:   3'- -GGGUGGUAGACGGCGUaGAuguCGCC- -5'
26523 3' -55 NC_005357.1 + 672 0.76 0.192564
Target:  5'- gCCACCAg--GCCGC--CUACGGCGGc -3'
miRNA:   3'- gGGUGGUagaCGGCGuaGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 5793 0.75 0.214539
Target:  5'- uCCCGCCAUC-GCgGCAgCgcCAGCGGa -3'
miRNA:   3'- -GGGUGGUAGaCGgCGUaGauGUCGCC- -5'
26523 3' -55 NC_005357.1 + 31898 0.74 0.264944
Target:  5'- uUCCGCCAUCgagGCCGagugcCUGCGGCGu -3'
miRNA:   3'- -GGGUGGUAGa--CGGCgua--GAUGUCGCc -5'
26523 3' -55 NC_005357.1 + 17620 0.74 0.264944
Target:  5'- aCCgGCCucgauGUUUGCCGCAUCgUGCGGCa- -3'
miRNA:   3'- -GGgUGG-----UAGACGGCGUAG-AUGUCGcc -5'
26523 3' -55 NC_005357.1 + 26283 0.73 0.286187
Target:  5'- aCCACCAUCagcgugcgGCCGCAgucCUACGuCGGg -3'
miRNA:   3'- gGGUGGUAGa-------CGGCGUa--GAUGUcGCC- -5'
26523 3' -55 NC_005357.1 + 16256 0.73 0.286187
Target:  5'- gCCACCGaaaUCUGCgacCGCAUCgcagACGGCGa -3'
miRNA:   3'- gGGUGGU---AGACG---GCGUAGa---UGUCGCc -5'
26523 3' -55 NC_005357.1 + 33652 0.73 0.293561
Target:  5'- aCCCAUCGUgcGCCGCGUgCUGCccgaAGCGGc -3'
miRNA:   3'- -GGGUGGUAgaCGGCGUA-GAUG----UCGCC- -5'
26523 3' -55 NC_005357.1 + 38872 0.73 0.301082
Target:  5'- gCCCAgCCcgCUGCUGCG-CUAUucGGCGGc -3'
miRNA:   3'- -GGGU-GGuaGACGGCGUaGAUG--UCGCC- -5'
26523 3' -55 NC_005357.1 + 17876 0.72 0.323729
Target:  5'- cCUCGCCAUC-GCCGCG-CUGCGcgaccacGCGGu -3'
miRNA:   3'- -GGGUGGUAGaCGGCGUaGAUGU-------CGCC- -5'
26523 3' -55 NC_005357.1 + 33927 0.72 0.330196
Target:  5'- gCCCACCGcaUCUGCauuucuucauuacuCGCGUCgGCuGCGGc -3'
miRNA:   3'- -GGGUGGU--AGACG--------------GCGUAGaUGuCGCC- -5'
26523 3' -55 NC_005357.1 + 21738 0.72 0.349316
Target:  5'- gCCACCGUUgggcgcgGCCGCGUCcACAuaGGa -3'
miRNA:   3'- gGGUGGUAGa------CGGCGUAGaUGUcgCC- -5'
26523 3' -55 NC_005357.1 + 41720 0.72 0.357871
Target:  5'- gCCC-CUAUCcuggGCgGUAUCUugGGCGGc -3'
miRNA:   3'- -GGGuGGUAGa---CGgCGUAGAugUCGCC- -5'
26523 3' -55 NC_005357.1 + 6151 0.71 0.402807
Target:  5'- aCCCACUcgCcGCCGuCAUCUuccCAGCGc -3'
miRNA:   3'- -GGGUGGuaGaCGGC-GUAGAu--GUCGCc -5'
26523 3' -55 NC_005357.1 + 6886 0.7 0.430455
Target:  5'- gUCCACCAUCUGCUGgCAUCgcaucauCAggaaauaggcauuGCGGc -3'
miRNA:   3'- -GGGUGGUAGACGGC-GUAGau-----GU-------------CGCC- -5'
26523 3' -55 NC_005357.1 + 30139 0.7 0.431429
Target:  5'- gCCGCCGgcCUGCacCGCGUCggacauCAGCGGc -3'
miRNA:   3'- gGGUGGUa-GACG--GCGUAGau----GUCGCC- -5'
26523 3' -55 NC_005357.1 + 25588 0.7 0.451158
Target:  5'- gCCGCgGUCUGCgGCccagGCAGUGGc -3'
miRNA:   3'- gGGUGgUAGACGgCGuagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 36633 0.7 0.461206
Target:  5'- aUCCGCUGgcgCUGCCGCG---AUGGCGGg -3'
miRNA:   3'- -GGGUGGUa--GACGGCGUagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 27191 0.69 0.471371
Target:  5'- gCCgACCcUCUGCCGUugaugaucguGUCgauguCGGCGGa -3'
miRNA:   3'- -GGgUGGuAGACGGCG----------UAGau---GUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.