miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26523 3' -55 NC_005357.1 + 16661 0.68 0.578264
Target:  5'- gCgGCCAUCguUGCCGCcgCccaGCAGCGc -3'
miRNA:   3'- gGgUGGUAG--ACGGCGuaGa--UGUCGCc -5'
26523 3' -55 NC_005357.1 + 24792 0.68 0.578264
Target:  5'- gUgGCCGUaCUGCCGCAcgaUGCGGCa- -3'
miRNA:   3'- gGgUGGUA-GACGGCGUag-AUGUCGcc -5'
26523 3' -55 NC_005357.1 + 14837 0.68 0.567243
Target:  5'- aCCaCGCCAUCUGgCGCcgcCUGCuGCcGGu -3'
miRNA:   3'- -GG-GUGGUAGACgGCGua-GAUGuCG-CC- -5'
26523 3' -55 NC_005357.1 + 3556 0.68 0.567243
Target:  5'- uCCCGCCAaCcgcGCCGCAUaaauuuCAGCGa -3'
miRNA:   3'- -GGGUGGUaGa--CGGCGUAgau---GUCGCc -5'
26523 3' -55 NC_005357.1 + 24990 0.68 0.562849
Target:  5'- aCCCACCAgcacaaaggggGCCGacg--ACAGCGGg -3'
miRNA:   3'- -GGGUGGUaga--------CGGCguagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 26352 0.68 0.545371
Target:  5'- aCgACCAUCUacggcGCCGCGc--GCGGCGGc -3'
miRNA:   3'- gGgUGGUAGA-----CGGCGUagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 4023 0.68 0.534537
Target:  5'- gCCACCAgcgUCaUGCCGCgcggGUCgagcGCAGcCGGg -3'
miRNA:   3'- gGGUGGU---AG-ACGGCG----UAGa---UGUC-GCC- -5'
26523 3' -55 NC_005357.1 + 12997 0.68 0.523779
Target:  5'- gCCCGCCGUUcucguacagGCCGCGcagcGCAGUGGc -3'
miRNA:   3'- -GGGUGGUAGa--------CGGCGUaga-UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 27678 0.68 0.523779
Target:  5'- cUCCACCgugGUCUuggaauacagGCCGCG-CgccgGCAGCGGc -3'
miRNA:   3'- -GGGUGG---UAGA----------CGGCGUaGa---UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 36512 0.69 0.50886
Target:  5'- gCCGCCAgcggcgaaaagaUGCCGgAcgaUCUGCGGUGGg -3'
miRNA:   3'- gGGUGGUag----------ACGGCgU---AGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 1131 0.69 0.481649
Target:  5'- gCCCgguguaACCGUUaGCuCGCG-CUACGGCGGc -3'
miRNA:   3'- -GGG------UGGUAGaCG-GCGUaGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 27191 0.69 0.471371
Target:  5'- gCCgACCcUCUGCCGUugaugaucguGUCgauguCGGCGGa -3'
miRNA:   3'- -GGgUGGuAGACGGCG----------UAGau---GUCGCC- -5'
26523 3' -55 NC_005357.1 + 36633 0.7 0.461206
Target:  5'- aUCCGCUGgcgCUGCCGCG---AUGGCGGg -3'
miRNA:   3'- -GGGUGGUa--GACGGCGUagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 25588 0.7 0.451158
Target:  5'- gCCGCgGUCUGCgGCccagGCAGUGGc -3'
miRNA:   3'- gGGUGgUAGACGgCGuagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 30139 0.7 0.431429
Target:  5'- gCCGCCGgcCUGCacCGCGUCggacauCAGCGGc -3'
miRNA:   3'- gGGUGGUa-GACG--GCGUAGau----GUCGCC- -5'
26523 3' -55 NC_005357.1 + 6886 0.7 0.430455
Target:  5'- gUCCACCAUCUGCUGgCAUCgcaucauCAggaaauaggcauuGCGGc -3'
miRNA:   3'- -GGGUGGUAGACGGC-GUAGau-----GU-------------CGCC- -5'
26523 3' -55 NC_005357.1 + 6151 0.71 0.402807
Target:  5'- aCCCACUcgCcGCCGuCAUCUuccCAGCGc -3'
miRNA:   3'- -GGGUGGuaGaCGGC-GUAGAu--GUCGCc -5'
26523 3' -55 NC_005357.1 + 41720 0.72 0.357871
Target:  5'- gCCC-CUAUCcuggGCgGUAUCUugGGCGGc -3'
miRNA:   3'- -GGGuGGUAGa---CGgCGUAGAugUCGCC- -5'
26523 3' -55 NC_005357.1 + 21738 0.72 0.349316
Target:  5'- gCCACCGUUgggcgcgGCCGCGUCcACAuaGGa -3'
miRNA:   3'- gGGUGGUAGa------CGGCGUAGaUGUcgCC- -5'
26523 3' -55 NC_005357.1 + 33927 0.72 0.330196
Target:  5'- gCCCACCGcaUCUGCauuucuucauuacuCGCGUCgGCuGCGGc -3'
miRNA:   3'- -GGGUGGU--AGACG--------------GCGUAGaUGuCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.