miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26523 3' -55 NC_005357.1 + 672 0.76 0.192564
Target:  5'- gCCACCAg--GCCGC--CUACGGCGGc -3'
miRNA:   3'- gGGUGGUagaCGGCGuaGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 1131 0.69 0.481649
Target:  5'- gCCCgguguaACCGUUaGCuCGCG-CUACGGCGGc -3'
miRNA:   3'- -GGG------UGGUAGaCG-GCGUaGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 3556 0.68 0.567243
Target:  5'- uCCCGCCAaCcgcGCCGCAUaaauuuCAGCGa -3'
miRNA:   3'- -GGGUGGUaGa--CGGCGUAgau---GUCGCc -5'
26523 3' -55 NC_005357.1 + 4023 0.68 0.534537
Target:  5'- gCCACCAgcgUCaUGCCGCgcggGUCgagcGCAGcCGGg -3'
miRNA:   3'- gGGUGGU---AG-ACGGCG----UAGa---UGUC-GCC- -5'
26523 3' -55 NC_005357.1 + 4111 0.66 0.689428
Target:  5'- uUCCGCCA---GCCuGCG-CUGCAGCGu -3'
miRNA:   3'- -GGGUGGUagaCGG-CGUaGAUGUCGCc -5'
26523 3' -55 NC_005357.1 + 5793 0.75 0.214539
Target:  5'- uCCCGCCAUC-GCgGCAgCgcCAGCGGa -3'
miRNA:   3'- -GGGUGGUAGaCGgCGUaGauGUCGCC- -5'
26523 3' -55 NC_005357.1 + 6151 0.71 0.402807
Target:  5'- aCCCACUcgCcGCCGuCAUCUuccCAGCGc -3'
miRNA:   3'- -GGGUGGuaGaCGGC-GUAGAu--GUCGCc -5'
26523 3' -55 NC_005357.1 + 6886 0.7 0.430455
Target:  5'- gUCCACCAUCUGCUGgCAUCgcaucauCAggaaauaggcauuGCGGc -3'
miRNA:   3'- -GGGUGGUAGACGGC-GUAGau-----GU-------------CGCC- -5'
26523 3' -55 NC_005357.1 + 7587 0.66 0.688326
Target:  5'- gCCGCCgcguagggucaggGUCUGUC-CGUCUGCcGUGGu -3'
miRNA:   3'- gGGUGG-------------UAGACGGcGUAGAUGuCGCC- -5'
26523 3' -55 NC_005357.1 + 8039 0.66 0.678385
Target:  5'- gCCGCCGUCcuUGCCGcCGUCcaugACGcGCGc -3'
miRNA:   3'- gGGUGGUAG--ACGGC-GUAGa---UGU-CGCc -5'
26523 3' -55 NC_005357.1 + 10330 0.67 0.589331
Target:  5'- gCCagGCCGUa-GCCGUcgCUGCGGCGu -3'
miRNA:   3'- gGG--UGGUAgaCGGCGuaGAUGUCGCc -5'
26523 3' -55 NC_005357.1 + 10672 0.66 0.689428
Target:  5'- gCCGCCGUgUccaGuuGCGUCUugacgGCAGCGc -3'
miRNA:   3'- gGGUGGUAgA---CggCGUAGA-----UGUCGCc -5'
26523 3' -55 NC_005357.1 + 11317 0.66 0.686121
Target:  5'- cCCCGCUAUCUcgcaccacucgccgGCCuGCAcCgaggugaGCAGCGGc -3'
miRNA:   3'- -GGGUGGUAGA--------------CGG-CGUaGa------UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 11673 0.66 0.645031
Target:  5'- -aCACCA-CUGCCcaagGUGUCagacUGCGGCGGa -3'
miRNA:   3'- ggGUGGUaGACGG----CGUAG----AUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 11859 1.12 0.00056
Target:  5'- gCCCACCAUCUGCCGCAUCUACAGCGGc -3'
miRNA:   3'- -GGGUGGUAGACGGCGUAGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 12292 0.67 0.611566
Target:  5'- gCCCAgCG--UGCCGg--CUACGGCGGc -3'
miRNA:   3'- -GGGUgGUagACGGCguaGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 12997 0.68 0.523779
Target:  5'- gCCCGCCGUUcucguacagGCCGCGcagcGCAGUGGc -3'
miRNA:   3'- -GGGUGGUAGa--------CGGCGUaga-UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 14837 0.68 0.567243
Target:  5'- aCCaCGCCAUCUGgCGCcgcCUGCuGCcGGu -3'
miRNA:   3'- -GG-GUGGUAGACgGCGua-GAUGuCG-CC- -5'
26523 3' -55 NC_005357.1 + 16256 0.73 0.286187
Target:  5'- gCCACCGaaaUCUGCgacCGCAUCgcagACGGCGa -3'
miRNA:   3'- gGGUGGU---AGACG---GCGUAGa---UGUCGCc -5'
26523 3' -55 NC_005357.1 + 16661 0.68 0.578264
Target:  5'- gCgGCCAUCguUGCCGCcgCccaGCAGCGc -3'
miRNA:   3'- gGgUGGUAG--ACGGCGuaGa--UGUCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.