miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26523 3' -55 NC_005357.1 + 30730 0.66 0.689428
Target:  5'- cCUCGCCAagcggcuaagUCcGCCGCAgUCUgacaccuuggGCAGUGGu -3'
miRNA:   3'- -GGGUGGU----------AGaCGGCGU-AGA----------UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 31898 0.74 0.264944
Target:  5'- uUCCGCCAUCgagGCCGagugcCUGCGGCGu -3'
miRNA:   3'- -GGGUGGUAGa--CGGCgua--GAUGUCGCc -5'
26523 3' -55 NC_005357.1 + 33652 0.73 0.293561
Target:  5'- aCCCAUCGUgcGCCGCGUgCUGCccgaAGCGGc -3'
miRNA:   3'- -GGGUGGUAgaCGGCGUA-GAUG----UCGCC- -5'
26523 3' -55 NC_005357.1 + 33927 0.72 0.330196
Target:  5'- gCCCACCGcaUCUGCauuucuucauuacuCGCGUCgGCuGCGGc -3'
miRNA:   3'- -GGGUGGU--AGACG--------------GCGUAGaUGuCGCC- -5'
26523 3' -55 NC_005357.1 + 36512 0.69 0.50886
Target:  5'- gCCGCCAgcggcgaaaagaUGCCGgAcgaUCUGCGGUGGg -3'
miRNA:   3'- gGGUGGUag----------ACGGCgU---AGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 36633 0.7 0.461206
Target:  5'- aUCCGCUGgcgCUGCCGCG---AUGGCGGg -3'
miRNA:   3'- -GGGUGGUa--GACGGCGUagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 37774 0.66 0.688326
Target:  5'- gCCCGCCAacaaccuguccgaUCuUGCCGaccCUGCGGCa- -3'
miRNA:   3'- -GGGUGGU-------------AG-ACGGCguaGAUGUCGcc -5'
26523 3' -55 NC_005357.1 + 38872 0.73 0.301082
Target:  5'- gCCCAgCCcgCUGCUGCG-CUAUucGGCGGc -3'
miRNA:   3'- -GGGU-GGuaGACGGCGUaGAUG--UCGCC- -5'
26523 3' -55 NC_005357.1 + 40509 0.66 0.643915
Target:  5'- gCCCACCcacaagCUGCUGCGcaaguccUCggucaAGCGGg -3'
miRNA:   3'- -GGGUGGua----GACGGCGU-------AGaug--UCGCC- -5'
26523 3' -55 NC_005357.1 + 41428 0.66 0.645031
Target:  5'- cCCgGCCAg-UGgCGCGg--GCAGCGGg -3'
miRNA:   3'- -GGgUGGUagACgGCGUagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 41720 0.72 0.357871
Target:  5'- gCCC-CUAUCcuggGCgGUAUCUugGGCGGc -3'
miRNA:   3'- -GGGuGGUAGa---CGgCGUAGAugUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.