miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26523 3' -55 NC_005357.1 + 41428 0.66 0.645031
Target:  5'- cCCgGCCAg-UGgCGCGg--GCAGCGGg -3'
miRNA:   3'- -GGgUGGUagACgGCGUagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 27678 0.68 0.523779
Target:  5'- cUCCACCgugGUCUuggaauacagGCCGCG-CgccgGCAGCGGc -3'
miRNA:   3'- -GGGUGG---UAGA----------CGGCGUaGa---UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 4023 0.68 0.534537
Target:  5'- gCCACCAgcgUCaUGCCGCgcggGUCgagcGCAGcCGGg -3'
miRNA:   3'- gGGUGGU---AG-ACGGCG----UAGa---UGUC-GCC- -5'
26523 3' -55 NC_005357.1 + 24990 0.68 0.562849
Target:  5'- aCCCACCAgcacaaaggggGCCGacg--ACAGCGGg -3'
miRNA:   3'- -GGGUGGUaga--------CGGCguagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 10330 0.67 0.589331
Target:  5'- gCCagGCCGUa-GCCGUcgCUGCGGCGu -3'
miRNA:   3'- gGG--UGGUAgaCGGCGuaGAUGUCGCc -5'
26523 3' -55 NC_005357.1 + 12292 0.67 0.611566
Target:  5'- gCCCAgCG--UGCCGg--CUACGGCGGc -3'
miRNA:   3'- -GGGUgGUagACGGCguaGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 29050 0.67 0.622716
Target:  5'- aCCCACCGgcgGCuCGUAggccauCAGCGGg -3'
miRNA:   3'- -GGGUGGUagaCG-GCGUagau--GUCGCC- -5'
26523 3' -55 NC_005357.1 + 11673 0.66 0.645031
Target:  5'- -aCACCA-CUGCCcaagGUGUCagacUGCGGCGGa -3'
miRNA:   3'- ggGUGGUaGACGG----CGUAG----AUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 25644 0.66 0.645031
Target:  5'- gUCCACCucggcgaguUCUGCCGgCGUCaUGuacgucaucagcCGGCGGa -3'
miRNA:   3'- -GGGUGGu--------AGACGGC-GUAG-AU------------GUCGCC- -5'
26523 3' -55 NC_005357.1 + 12997 0.68 0.523779
Target:  5'- gCCCGCCGUUcucguacagGCCGCGcagcGCAGUGGc -3'
miRNA:   3'- -GGGUGGUAGa--------CGGCGUaga-UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 36512 0.69 0.50886
Target:  5'- gCCGCCAgcggcgaaaagaUGCCGgAcgaUCUGCGGUGGg -3'
miRNA:   3'- gGGUGGUag----------ACGGCgU---AGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 1131 0.69 0.481649
Target:  5'- gCCCgguguaACCGUUaGCuCGCG-CUACGGCGGc -3'
miRNA:   3'- -GGG------UGGUAGaCG-GCGUaGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 31898 0.74 0.264944
Target:  5'- uUCCGCCAUCgagGCCGagugcCUGCGGCGu -3'
miRNA:   3'- -GGGUGGUAGa--CGGCgua--GAUGUCGCc -5'
26523 3' -55 NC_005357.1 + 17620 0.74 0.264944
Target:  5'- aCCgGCCucgauGUUUGCCGCAUCgUGCGGCa- -3'
miRNA:   3'- -GGgUGG-----UAGACGGCGUAG-AUGUCGcc -5'
26523 3' -55 NC_005357.1 + 33927 0.72 0.330196
Target:  5'- gCCCACCGcaUCUGCauuucuucauuacuCGCGUCgGCuGCGGc -3'
miRNA:   3'- -GGGUGGU--AGACG--------------GCGUAGaUGuCGCC- -5'
26523 3' -55 NC_005357.1 + 21738 0.72 0.349316
Target:  5'- gCCACCGUUgggcgcgGCCGCGUCcACAuaGGa -3'
miRNA:   3'- gGGUGGUAGa------CGGCGUAGaUGUcgCC- -5'
26523 3' -55 NC_005357.1 + 6886 0.7 0.430455
Target:  5'- gUCCACCAUCUGCUGgCAUCgcaucauCAggaaauaggcauuGCGGc -3'
miRNA:   3'- -GGGUGGUAGACGGC-GUAGau-----GU-------------CGCC- -5'
26523 3' -55 NC_005357.1 + 30139 0.7 0.431429
Target:  5'- gCCGCCGgcCUGCacCGCGUCggacauCAGCGGc -3'
miRNA:   3'- gGGUGGUa-GACG--GCGUAGau----GUCGCC- -5'
26523 3' -55 NC_005357.1 + 25588 0.7 0.451158
Target:  5'- gCCGCgGUCUGCgGCccagGCAGUGGc -3'
miRNA:   3'- gGGUGgUAGACGgCGuagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 36633 0.7 0.461206
Target:  5'- aUCCGCUGgcgCUGCCGCG---AUGGCGGg -3'
miRNA:   3'- -GGGUGGUa--GACGGCGUagaUGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.