miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26523 3' -55 NC_005357.1 + 11859 1.12 0.00056
Target:  5'- gCCCACCAUCUGCCGCAUCUACAGCGGc -3'
miRNA:   3'- -GGGUGGUAGACGGCGUAGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 40509 0.66 0.643915
Target:  5'- gCCCACCcacaagCUGCUGCGcaaguccUCggucaAGCGGg -3'
miRNA:   3'- -GGGUGGua----GACGGCGU-------AGaug--UCGCC- -5'
26523 3' -55 NC_005357.1 + 11317 0.66 0.686121
Target:  5'- cCCCGCUAUCUcgcaccacucgccgGCCuGCAcCgaggugaGCAGCGGc -3'
miRNA:   3'- -GGGUGGUAGA--------------CGG-CGUaGa------UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 30730 0.66 0.689428
Target:  5'- cCUCGCCAagcggcuaagUCcGCCGCAgUCUgacaccuuggGCAGUGGu -3'
miRNA:   3'- -GGGUGGU----------AGaCGGCGU-AGA----------UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 16256 0.73 0.286187
Target:  5'- gCCACCGaaaUCUGCgacCGCAUCgcagACGGCGa -3'
miRNA:   3'- gGGUGGU---AGACG---GCGUAGa---UGUCGCc -5'
26523 3' -55 NC_005357.1 + 33652 0.73 0.293561
Target:  5'- aCCCAUCGUgcGCCGCGUgCUGCccgaAGCGGc -3'
miRNA:   3'- -GGGUGGUAgaCGGCGUA-GAUG----UCGCC- -5'
26523 3' -55 NC_005357.1 + 17876 0.72 0.323729
Target:  5'- cCUCGCCAUC-GCCGCG-CUGCGcgaccacGCGGu -3'
miRNA:   3'- -GGGUGGUAGaCGGCGUaGAUGU-------CGCC- -5'
26523 3' -55 NC_005357.1 + 41720 0.72 0.357871
Target:  5'- gCCC-CUAUCcuggGCgGUAUCUugGGCGGc -3'
miRNA:   3'- -GGGuGGUAGa---CGgCGUAGAugUCGCC- -5'
26523 3' -55 NC_005357.1 + 26352 0.68 0.545371
Target:  5'- aCgACCAUCUacggcGCCGCGc--GCGGCGGc -3'
miRNA:   3'- gGgUGGUAGA-----CGGCGUagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 3556 0.68 0.567243
Target:  5'- uCCCGCCAaCcgcGCCGCAUaaauuuCAGCGa -3'
miRNA:   3'- -GGGUGGUaGa--CGGCGUAgau---GUCGCc -5'
26523 3' -55 NC_005357.1 + 27191 0.69 0.471371
Target:  5'- gCCgACCcUCUGCCGUugaugaucguGUCgauguCGGCGGa -3'
miRNA:   3'- -GGgUGGuAGACGGCG----------UAGau---GUCGCC- -5'
26523 3' -55 NC_005357.1 + 25302 0.76 0.182333
Target:  5'- cCUCGCCAUCUGCCGCAaCUuc-GUGGu -3'
miRNA:   3'- -GGGUGGUAGACGGCGUaGAuguCGCC- -5'
26523 3' -55 NC_005357.1 + 16661 0.68 0.578264
Target:  5'- gCgGCCAUCguUGCCGCcgCccaGCAGCGc -3'
miRNA:   3'- gGgUGGUAG--ACGGCGuaGa--UGUCGCc -5'
26523 3' -55 NC_005357.1 + 5793 0.75 0.214539
Target:  5'- uCCCGCCAUC-GCgGCAgCgcCAGCGGa -3'
miRNA:   3'- -GGGUGGUAGaCGgCGUaGauGUCGCC- -5'
26523 3' -55 NC_005357.1 + 6151 0.71 0.402807
Target:  5'- aCCCACUcgCcGCCGuCAUCUuccCAGCGc -3'
miRNA:   3'- -GGGUGGuaGaCGGC-GUAGAu--GUCGCc -5'
26523 3' -55 NC_005357.1 + 24792 0.68 0.578264
Target:  5'- gUgGCCGUaCUGCCGCAcgaUGCGGCa- -3'
miRNA:   3'- gGgUGGUA-GACGGCGUag-AUGUCGcc -5'
26523 3' -55 NC_005357.1 + 37774 0.66 0.688326
Target:  5'- gCCCGCCAacaaccuguccgaUCuUGCCGaccCUGCGGCa- -3'
miRNA:   3'- -GGGUGGU-------------AG-ACGGCguaGAUGUCGcc -5'
26523 3' -55 NC_005357.1 + 26283 0.73 0.286187
Target:  5'- aCCACCAUCagcgugcgGCCGCAgucCUACGuCGGg -3'
miRNA:   3'- gGGUGGUAGa-------CGGCGUa--GAUGUcGCC- -5'
26523 3' -55 NC_005357.1 + 38872 0.73 0.301082
Target:  5'- gCCCAgCCcgCUGCUGCG-CUAUucGGCGGc -3'
miRNA:   3'- -GGGU-GGuaGACGGCGUaGAUG--UCGCC- -5'
26523 3' -55 NC_005357.1 + 14837 0.68 0.567243
Target:  5'- aCCaCGCCAUCUGgCGCcgcCUGCuGCcGGu -3'
miRNA:   3'- -GG-GUGGUAGACgGCGua-GAUGuCG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.