miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26523 3' -55 NC_005357.1 + 22511 0.65 0.700414
Target:  5'- gCCCGCCAUCauccCCGCAgcgagCacgcGCAGCGc -3'
miRNA:   3'- -GGGUGGUAGac--GGCGUa----Ga---UGUCGCc -5'
26523 3' -55 NC_005357.1 + 6886 0.7 0.430455
Target:  5'- gUCCACCAUCUGCUGgCAUCgcaucauCAggaaauaggcauuGCGGc -3'
miRNA:   3'- -GGGUGGUAGACGGC-GUAGau-----GU-------------CGCC- -5'
26523 3' -55 NC_005357.1 + 21441 0.65 0.700414
Target:  5'- gCCCugCAUuucCUGCgGCGgggGCGGCaGGa -3'
miRNA:   3'- -GGGugGUA---GACGgCGUagaUGUCG-CC- -5'
26523 3' -55 NC_005357.1 + 10672 0.66 0.689428
Target:  5'- gCCGCCGUgUccaGuuGCGUCUugacgGCAGCGc -3'
miRNA:   3'- gGGUGGUAgA---CggCGUAGA-----UGUCGCc -5'
26523 3' -55 NC_005357.1 + 4111 0.66 0.689428
Target:  5'- uUCCGCCA---GCCuGCG-CUGCAGCGu -3'
miRNA:   3'- -GGGUGGUagaCGG-CGUaGAUGUCGCc -5'
26523 3' -55 NC_005357.1 + 7587 0.66 0.688326
Target:  5'- gCCGCCgcguagggucaggGUCUGUC-CGUCUGCcGUGGu -3'
miRNA:   3'- gGGUGG-------------UAGACGGcGUAGAUGuCGCC- -5'
26523 3' -55 NC_005357.1 + 30658 0.66 0.687223
Target:  5'- aCCAauUCGUCggGCCGCuggguguagGCGGCGGg -3'
miRNA:   3'- gGGU--GGUAGa-CGGCGuaga-----UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 30139 0.7 0.431429
Target:  5'- gCCGCCGgcCUGCacCGCGUCggacauCAGCGGc -3'
miRNA:   3'- gGGUGGUa-GACG--GCGUAGau----GUCGCC- -5'
26523 3' -55 NC_005357.1 + 1131 0.69 0.481649
Target:  5'- gCCCgguguaACCGUUaGCuCGCG-CUACGGCGGc -3'
miRNA:   3'- -GGG------UGGUAGaCG-GCGUaGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 36512 0.69 0.50886
Target:  5'- gCCGCCAgcggcgaaaagaUGCCGgAcgaUCUGCGGUGGg -3'
miRNA:   3'- gGGUGGUag----------ACGGCgU---AGAUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 12997 0.68 0.523779
Target:  5'- gCCCGCCGUUcucguacagGCCGCGcagcGCAGUGGc -3'
miRNA:   3'- -GGGUGGUAGa--------CGGCGUaga-UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 27678 0.68 0.523779
Target:  5'- cUCCACCgugGUCUuggaauacagGCCGCG-CgccgGCAGCGGc -3'
miRNA:   3'- -GGGUGG---UAGA----------CGGCGUaGa---UGUCGCC- -5'
26523 3' -55 NC_005357.1 + 4023 0.68 0.534537
Target:  5'- gCCACCAgcgUCaUGCCGCgcggGUCgagcGCAGcCGGg -3'
miRNA:   3'- gGGUGGU---AG-ACGGCG----UAGa---UGUC-GCC- -5'
26523 3' -55 NC_005357.1 + 24990 0.68 0.562849
Target:  5'- aCCCACCAgcacaaaggggGCCGacg--ACAGCGGg -3'
miRNA:   3'- -GGGUGGUaga--------CGGCguagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 25644 0.66 0.645031
Target:  5'- gUCCACCucggcgaguUCUGCCGgCGUCaUGuacgucaucagcCGGCGGa -3'
miRNA:   3'- -GGGUGGu--------AGACGGC-GUAG-AU------------GUCGCC- -5'
26523 3' -55 NC_005357.1 + 41428 0.66 0.645031
Target:  5'- cCCgGCCAg-UGgCGCGg--GCAGCGGg -3'
miRNA:   3'- -GGgUGGUagACgGCGUagaUGUCGCC- -5'
26523 3' -55 NC_005357.1 + 28562 0.66 0.667297
Target:  5'- gCCgGCCAUCgcgGCgCGCAcgUCggccaccgGCAGCGu -3'
miRNA:   3'- -GGgUGGUAGa--CG-GCGU--AGa-------UGUCGCc -5'
26523 3' -55 NC_005357.1 + 25515 0.66 0.667297
Target:  5'- gCCCGCgAugaggucgguUUUGCCGCcgCcgGCAGCGc -3'
miRNA:   3'- -GGGUGgU----------AGACGGCGuaGa-UGUCGCc -5'
26523 3' -55 NC_005357.1 + 26160 0.66 0.678385
Target:  5'- gCUCGCCGUCUGCgaugcgguCGCAgauuuCGGUGGc -3'
miRNA:   3'- -GGGUGGUAGACG--------GCGUagau-GUCGCC- -5'
26523 3' -55 NC_005357.1 + 8039 0.66 0.678385
Target:  5'- gCCGCCGUCcuUGCCGcCGUCcaugACGcGCGc -3'
miRNA:   3'- gGGUGGUAG--ACGGC-GUAGa---UGU-CGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.