Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26524 | 3' | -59.8 | NC_005357.1 | + | 4118 | 0.67 | 0.344116 |
Target: 5'- aGCCUGCGCUgCAGCGuugcuuCCCGGCGcAUa -3' miRNA: 3'- gCGGAUGUGG-GUCGCc-----GGGCUGCuUA- -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 18662 | 0.67 | 0.344116 |
Target: 5'- aGCCgcgGCgcaucgGCCCGGUGGCgCCGGCa--- -3' miRNA: 3'- gCGGa--UG------UGGGUCGCCG-GGCUGcuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 28074 | 0.67 | 0.335959 |
Target: 5'- cCGCCUuccaggACACCgcgaacCAGCaGGCCCGGCa--- -3' miRNA: 3'- -GCGGA------UGUGG------GUCG-CCGGGCUGcuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 40181 | 0.67 | 0.335959 |
Target: 5'- gCGUCgaACugCCGGCcaaGGCCCGGCGu-- -3' miRNA: 3'- -GCGGa-UGugGGUCG---CCGGGCUGCuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 26735 | 0.67 | 0.335959 |
Target: 5'- gGCggACGCCUucuucgucgauAGCGGCCUGACGu-- -3' miRNA: 3'- gCGgaUGUGGG-----------UCGCCGGGCUGCuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 29417 | 0.67 | 0.327943 |
Target: 5'- uCGCCacUGCGCUgcGCGGCCUGuACGAGa -3' miRNA: 3'- -GCGG--AUGUGGguCGCCGGGC-UGCUUa -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 9202 | 0.67 | 0.327943 |
Target: 5'- gGCCU--GCUCGGCGGCgCGGCGc-- -3' miRNA: 3'- gCGGAugUGGGUCGCCGgGCUGCuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 31299 | 0.67 | 0.327943 |
Target: 5'- aGCCUGgcgacCGCgUGGUGGCCCGGCuGGAa -3' miRNA: 3'- gCGGAU-----GUGgGUCGCCGGGCUG-CUUa -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 40206 | 0.67 | 0.32007 |
Target: 5'- cCGCCUGCugCgC-GUGGugcuaCCCGACGAGg -3' miRNA: 3'- -GCGGAUGugG-GuCGCC-----GGGCUGCUUa -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 38672 | 0.67 | 0.32007 |
Target: 5'- aGgCUACGUCCAGCGGCggcaCCGACGu-- -3' miRNA: 3'- gCgGAUGUGGGUCGCCG----GGCUGCuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 37853 | 0.68 | 0.297306 |
Target: 5'- uCGCCUggcGCACCgAGCaGcGCCuCGGCGAc- -3' miRNA: 3'- -GCGGA---UGUGGgUCG-C-CGG-GCUGCUua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 2726 | 0.68 | 0.297306 |
Target: 5'- gGCCggACGCUUgagcGCGGCCCGGCGc-- -3' miRNA: 3'- gCGGa-UGUGGGu---CGCCGGGCUGCuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 7729 | 0.68 | 0.296569 |
Target: 5'- aGCgcACGCUCGGCGGCCggcuugcuguuggCGACGAAg -3' miRNA: 3'- gCGgaUGUGGGUCGCCGG-------------GCUGCUUa -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 16115 | 0.68 | 0.28284 |
Target: 5'- cCGgCUGCACgUCGGUGGcCCCGACGu-- -3' miRNA: 3'- -GCgGAUGUG-GGUCGCC-GGGCUGCuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 42230 | 0.69 | 0.268937 |
Target: 5'- uCGCCguguCGCCCGGCaGCgUGACGGu- -3' miRNA: 3'- -GCGGau--GUGGGUCGcCGgGCUGCUua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 33865 | 0.69 | 0.266899 |
Target: 5'- gGCCUacgACGCCCAggaugaggucgagcGCGGCCUG-CGAu- -3' miRNA: 3'- gCGGA---UGUGGGU--------------CGCCGGGCuGCUua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 18389 | 0.69 | 0.262194 |
Target: 5'- uGCCgaugGCGCCgguGGCGGCCacguCGGCGAAg -3' miRNA: 3'- gCGGa---UGUGGg--UCGCCGG----GCUGCUUa -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 26365 | 0.69 | 0.242791 |
Target: 5'- gCGCC-GCGCgCGGCGGCCaCGugcGCGAAc -3' miRNA: 3'- -GCGGaUGUGgGUCGCCGG-GC---UGCUUa -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 8173 | 0.7 | 0.224598 |
Target: 5'- gCGCgUGCGCCCGGauGCugCCGGCGAu- -3' miRNA: 3'- -GCGgAUGUGGGUCgcCG--GGCUGCUua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 29699 | 0.7 | 0.224012 |
Target: 5'- gCGCg-GCACCCAGCaccaacgGGCCgGGCGAc- -3' miRNA: 3'- -GCGgaUGUGGGUCG-------CCGGgCUGCUua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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