miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26525 3' -59.8 NC_005357.1 + 1184 0.66 0.417864
Target:  5'- uCGCCGcCGgGGUCgGCCGGGU--UGUUGg -3'
miRNA:   3'- -GUGGU-GCgCCAG-CGGUCCGaaGCGAC- -5'
26525 3' -59.8 NC_005357.1 + 1748 0.66 0.417864
Target:  5'- aCACCGgGCGGUCaugGCC-GGCcugCGcCUGg -3'
miRNA:   3'- -GUGGUgCGCCAG---CGGuCCGaa-GC-GAC- -5'
26525 3' -59.8 NC_005357.1 + 13179 0.66 0.417864
Target:  5'- gGCCGCGCuGGgCGCCcuuGGCcggCGUUGu -3'
miRNA:   3'- gUGGUGCG-CCaGCGGu--CCGaa-GCGAC- -5'
26525 3' -59.8 NC_005357.1 + 14956 0.66 0.408572
Target:  5'- -cUCGCGUGGU-GCguGGCggcgCGCUGg -3'
miRNA:   3'- guGGUGCGCCAgCGguCCGaa--GCGAC- -5'
26525 3' -59.8 NC_005357.1 + 28669 0.66 0.399411
Target:  5'- uGCCG-GCGGccUCGCCAGcGCggCGCg- -3'
miRNA:   3'- gUGGUgCGCC--AGCGGUC-CGaaGCGac -5'
26525 3' -59.8 NC_005357.1 + 34660 0.66 0.381488
Target:  5'- aCGCCgGCGCaGaucgCGCCGGuGCUgcaaUCGCUGa -3'
miRNA:   3'- -GUGG-UGCGcCa---GCGGUC-CGA----AGCGAC- -5'
26525 3' -59.8 NC_005357.1 + 35016 0.66 0.381488
Target:  5'- gGCCAUcCGGU-GCCcGGCUUCaaGCUGg -3'
miRNA:   3'- gUGGUGcGCCAgCGGuCCGAAG--CGAC- -5'
26525 3' -59.8 NC_005357.1 + 2661 0.67 0.364109
Target:  5'- gGCCA-GCGGUCGCCcAGGUgUUCGa-- -3'
miRNA:   3'- gUGGUgCGCCAGCGG-UCCG-AAGCgac -5'
26525 3' -59.8 NC_005357.1 + 38879 0.67 0.364109
Target:  5'- uGCgGCGCGGUUGgCGGGaCUgCGCg- -3'
miRNA:   3'- gUGgUGCGCCAGCgGUCC-GAaGCGac -5'
26525 3' -59.8 NC_005357.1 + 27833 0.67 0.364109
Target:  5'- uGCC-CGCGGUggCGCCGGccGCgcCGCUGc -3'
miRNA:   3'- gUGGuGCGCCA--GCGGUC--CGaaGCGAC- -5'
26525 3' -59.8 NC_005357.1 + 28021 0.67 0.347286
Target:  5'- gCGCCugGCGa-CGCCcaGCUUCGCUa -3'
miRNA:   3'- -GUGGugCGCcaGCGGucCGAAGCGAc -5'
26525 3' -59.8 NC_005357.1 + 13390 0.67 0.347286
Target:  5'- cCAgCGCGCGGUUG-UAGGCggcaUCGUUGc -3'
miRNA:   3'- -GUgGUGCGCCAGCgGUCCGa---AGCGAC- -5'
26525 3' -59.8 NC_005357.1 + 17327 0.67 0.339086
Target:  5'- gCACC-CGCuguaucccacGG-CGCCGGGCgcgcugCGCUGg -3'
miRNA:   3'- -GUGGuGCG----------CCaGCGGUCCGaa----GCGAC- -5'
26525 3' -59.8 NC_005357.1 + 30282 0.67 0.331027
Target:  5'- aCGCCuACGCGGaagcgcagCGCguGGCgcgUCGCg- -3'
miRNA:   3'- -GUGG-UGCGCCa-------GCGguCCGa--AGCGac -5'
26525 3' -59.8 NC_005357.1 + 24087 0.67 0.323109
Target:  5'- gACCGCGCGGg-GCaCGGGCacccCGCUa -3'
miRNA:   3'- gUGGUGCGCCagCG-GUCCGaa--GCGAc -5'
26525 3' -59.8 NC_005357.1 + 39546 0.68 0.303189
Target:  5'- uCACCGCGCuGGacauccucgaacuggUCGaaCCAGGCcccUCGCUGg -3'
miRNA:   3'- -GUGGUGCG-CC---------------AGC--GGUCCGa--AGCGAC- -5'
26525 3' -59.8 NC_005357.1 + 18355 0.68 0.30021
Target:  5'- -cCCGCGCGGUCGCCGcuaCUgugCGCg- -3'
miRNA:   3'- guGGUGCGCCAGCGGUcc-GAa--GCGac -5'
26525 3' -59.8 NC_005357.1 + 28232 0.68 0.292134
Target:  5'- gACCACGCGcGggucggacugCGCCAGGCUcaccaugUUGCg- -3'
miRNA:   3'- gUGGUGCGC-Ca---------GCGGUCCGA-------AGCGac -5'
26525 3' -59.8 NC_005357.1 + 39253 0.68 0.285653
Target:  5'- aCGCa--GCGGaCGCCGGGCUUgccaUGCUGc -3'
miRNA:   3'- -GUGgugCGCCaGCGGUCCGAA----GCGAC- -5'
26525 3' -59.8 NC_005357.1 + 3864 0.69 0.25822
Target:  5'- gUACCAgGCGccGUCGCUguAGGCcgCGCUGc -3'
miRNA:   3'- -GUGGUgCGC--CAGCGG--UCCGaaGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.