Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26525 | 5' | -52.4 | NC_005357.1 | + | 17977 | 0.66 | 0.819567 |
Target: 5'- cGUCGGCGucAAUGUCGCcgaggccgCGCgCGGCa -3' miRNA: 3'- -CAGUUGC--UUAUAGUGca------GCGgGCCGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 14405 | 0.66 | 0.819567 |
Target: 5'- -gUAGCGAAgcuggGCGUCGCCaGGCg -3' miRNA: 3'- caGUUGCUUauag-UGCAGCGGgCCGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 31292 | 0.66 | 0.807892 |
Target: 5'- -gCAGCGAAgccuggcgacCGCGUggugGCCCGGCUg -3' miRNA: 3'- caGUUGCUUaua-------GUGCAg---CGGGCCGA- -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 14037 | 0.66 | 0.799949 |
Target: 5'- uGUCGuugGAAUGgagCGCGaaaGCCCGGCg -3' miRNA: 3'- -CAGUug-CUUAUa--GUGCag-CGGGCCGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 15697 | 0.66 | 0.78985 |
Target: 5'- aUCGACGAAgAagGCGUcCGCCUgGGCa -3' miRNA: 3'- cAGUUGCUUaUagUGCA-GCGGG-CCGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 11783 | 0.66 | 0.78883 |
Target: 5'- -cCGACGAAUugGUCuGCGcccucauUCGCgCCGGCUg -3' miRNA: 3'- caGUUGCUUA--UAG-UGC-------AGCG-GGCCGA- -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 12212 | 0.67 | 0.75854 |
Target: 5'- aUCGcCGAGUGcgugCGCGUgcucaaGCCCGGCg -3' miRNA: 3'- cAGUuGCUUAUa---GUGCAg-----CGGGCCGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 17570 | 0.67 | 0.748886 |
Target: 5'- cGUCGauaGCGggUAUCucgucacccugcaauCGUUGCCCGaGCc -3' miRNA: 3'- -CAGU---UGCuuAUAGu--------------GCAGCGGGC-CGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 23076 | 0.67 | 0.736947 |
Target: 5'- cUCAACGGcaAUUcCGcCGCCUGGCg -3' miRNA: 3'- cAGUUGCUuaUAGuGCaGCGGGCCGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 12599 | 0.67 | 0.736947 |
Target: 5'- cGUCGAUGAAUuugcgCAUGgcgccgacgCGCUCGGCa -3' miRNA: 3'- -CAGUUGCUUAua---GUGCa--------GCGGGCCGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 10001 | 0.67 | 0.725973 |
Target: 5'- gGUCGAa-AGUGcCGCG-CGCCCGGCc -3' miRNA: 3'- -CAGUUgcUUAUaGUGCaGCGGGCCGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 27878 | 0.67 | 0.725973 |
Target: 5'- --gGGCGggUuucucGUCGCuGUUGUCCGGCg -3' miRNA: 3'- cagUUGCuuA-----UAGUG-CAGCGGGCCGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 9208 | 0.68 | 0.703736 |
Target: 5'- cUCGGCGGcgcggcgCACGUucugcggcgCGCCCGGCg -3' miRNA: 3'- cAGUUGCUuaua---GUGCA---------GCGGGCCGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 17413 | 0.68 | 0.692498 |
Target: 5'- uUCAGCGGcgccCACGUCGCCCuugagcaguGGCc -3' miRNA: 3'- cAGUUGCUuauaGUGCAGCGGG---------CCGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 18413 | 0.68 | 0.669845 |
Target: 5'- cGUCGGCGAAgGUgGCGUUGUCCGcCg -3' miRNA: 3'- -CAGUUGCUUaUAgUGCAGCGGGCcGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 1107 | 0.69 | 0.64704 |
Target: 5'- uGUCGcGCGGcAUGUCGCGcaUCgGCCCGGUg -3' miRNA: 3'- -CAGU-UGCU-UAUAGUGC--AG-CGGGCCGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 25179 | 0.7 | 0.594509 |
Target: 5'- gGUCGGCGGguugaAUGUCAUGagcacgcgcgaccgcUgGCCCGGCUu -3' miRNA: 3'- -CAGUUGCU-----UAUAGUGC---------------AgCGGGCCGA- -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 38356 | 0.73 | 0.415582 |
Target: 5'- aUCAACGAAUAcagccugugggacaUCAaGUucCGCCCGGCUg -3' miRNA: 3'- cAGUUGCUUAU--------------AGUgCA--GCGGGCCGA- -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 40167 | 0.73 | 0.412661 |
Target: 5'- cGUCAACGuggugCGCGUCgaacugccggccaagGCCCGGCg -3' miRNA: 3'- -CAGUUGCuuauaGUGCAG---------------CGGGCCGa -5' |
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26525 | 5' | -52.4 | NC_005357.1 | + | 11169 | 1.07 | 0.001952 |
Target: 5'- gGUCAACGAAUAUCACGUCGCCCGGCUc -3' miRNA: 3'- -CAGUUGCUUAUAGUGCAGCGGGCCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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