Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26526 | 3' | -60.9 | NC_005357.1 | + | 4354 | 0.66 | 0.283231 |
Target: 5'- cAGAGGaaucGGCCggacggCAGGCGGaugcGCAGCCAGg -3' miRNA: 3'- -UCUUCgu--CCGG------GUCCGCU----CGUCGGUU- -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 21262 | 0.66 | 0.278209 |
Target: 5'- cGcAGCAGGCCgcgcuguugaaccaGGGCGcggacacGGCGGCCAAg -3' miRNA: 3'- uCuUCGUCCGGg-------------UCCGC-------UCGUCGGUU- -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 18377 | 0.66 | 0.305566 |
Target: 5'- cGAGGUuGGCCUugccgauGGCGccgguGGCGGCCAc -3' miRNA: 3'- uCUUCGuCCGGGu------CCGC-----UCGUCGGUu -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 29095 | 0.66 | 0.290529 |
Target: 5'- cGAGGuCAGGCCCGuGCGGGacuugcuGCCGGu -3' miRNA: 3'- uCUUC-GUCCGGGUcCGCUCgu-----CGGUU- -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 10071 | 0.66 | 0.290529 |
Target: 5'- cGAGGCGucGUCgGGGCGAGCcguGCCAu -3' miRNA: 3'- uCUUCGUc-CGGgUCCGCUCGu--CGGUu -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 4059 | 0.67 | 0.230014 |
Target: 5'- cAGGccAGC-GGCCCAGGgGggauuGGUAGCCAu -3' miRNA: 3'- -UCU--UCGuCCGGGUCCgC-----UCGUCGGUu -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 24966 | 0.67 | 0.248911 |
Target: 5'- ---uGCAGGCCCuGGCGuGGCaccuGGCCu- -3' miRNA: 3'- ucuuCGUCCGGGuCCGC-UCG----UCGGuu -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 23573 | 0.67 | 0.236175 |
Target: 5'- --cGGCAGGUgCGGGCGGGgGGCg-- -3' miRNA: 3'- ucuUCGUCCGgGUCCGCUCgUCGguu -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 24207 | 0.68 | 0.212343 |
Target: 5'- ---cGUAGGCgcugCCAaaguccGGCGAGCGGCCGAu -3' miRNA: 3'- ucuuCGUCCG----GGU------CCGCUCGUCGGUU- -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 7051 | 0.68 | 0.195852 |
Target: 5'- cAGgcGCAuGGCCuCGGGCG-GCAGCg-- -3' miRNA: 3'- -UCuuCGU-CCGG-GUCCGCuCGUCGguu -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 28092 | 0.69 | 0.185489 |
Target: 5'- cGAaccAGCAGGCCC-GGCaGuuCAGCCAAg -3' miRNA: 3'- uCU---UCGUCCGGGuCCG-CucGUCGGUU- -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 31686 | 0.69 | 0.166208 |
Target: 5'- -cGAGCGcGCCCuuGGCGAGCAGCa-- -3' miRNA: 3'- ucUUCGUcCGGGu-CCGCUCGUCGguu -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 10583 | 0.69 | 0.180491 |
Target: 5'- cGGgcGUAGuaCCCAGGCGcGCAGCCu- -3' miRNA: 3'- -UCuuCGUCc-GGGUCCGCuCGUCGGuu -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 29452 | 0.69 | 0.175613 |
Target: 5'- cAGguGCuccuGGCaCCAGGCGAcgaagcgcGCGGCCAGu -3' miRNA: 3'- -UCuuCGu---CCG-GGUCCGCU--------CGUCGGUU- -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 24300 | 0.7 | 0.140653 |
Target: 5'- uGGggGCggugAGGUC--GGCGAGCAGCCGc -3' miRNA: 3'- -UCuuCG----UCCGGguCCGCUCGUCGGUu -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 19429 | 0.7 | 0.161676 |
Target: 5'- cAGcAGCAGGCcgaCCAGGCGAa-AGCCGAa -3' miRNA: 3'- -UCuUCGUCCG---GGUCCGCUcgUCGGUU- -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 27444 | 0.71 | 0.122161 |
Target: 5'- cGGccGCAGGCCCuGGCGcuGGUAuGCCAGc -3' miRNA: 3'- -UCuuCGUCCGGGuCCGC--UCGU-CGGUU- -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 39952 | 0.73 | 0.096935 |
Target: 5'- uGGggGCAGGCUUgguuccuggacaaAGGCGAGCgccugGGCCGc -3' miRNA: 3'- -UCuuCGUCCGGG-------------UCCGCUCG-----UCGGUu -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 18283 | 0.76 | 0.054295 |
Target: 5'- cGAGGCGcuGGgCCAGGCGcGCAGCCGg -3' miRNA: 3'- uCUUCGU--CCgGGUCCGCuCGUCGGUu -5' |
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26526 | 3' | -60.9 | NC_005357.1 | + | 10846 | 1.06 | 0.000233 |
Target: 5'- cAGAAGCAGGCCCAGGCGAGCAGCCAAa -3' miRNA: 3'- -UCUUCGUCCGGGUCCGCUCGUCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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