Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26527 | 3' | -60.6 | NC_005357.1 | + | 4348 | 0.75 | 0.087149 |
Target: 5'- uGAUGcuGGCCGuuGCGUUGCcggUGCGCGu -3' miRNA: 3'- -CUACauCCGGCggCGCAGCG---ACGCGC- -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 14398 | 0.66 | 0.336944 |
Target: 5'- --cGUAGGCguagcgaaGCUggGCGUCGCcagGCGCGc -3' miRNA: 3'- cuaCAUCCGg-------CGG--CGCAGCGa--CGCGC- -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 23030 | 0.66 | 0.345056 |
Target: 5'- -cUGuUGGGCUuguuGCUGCG-CGCUGCGUu -3' miRNA: 3'- cuAC-AUCCGG----CGGCGCaGCGACGCGc -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 17140 | 0.66 | 0.345056 |
Target: 5'- aGAUGgcgAGGCCGCuuugguacuucaCGuCGUCGaUGCGCc -3' miRNA: 3'- -CUACa--UCCGGCG------------GC-GCAGCgACGCGc -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 28085 | 0.66 | 0.370225 |
Target: 5'- --gGU-GGCCGCgGCGUCGUauuccGuCGCGg -3' miRNA: 3'- cuaCAuCCGGCGgCGCAGCGa----C-GCGC- -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 39591 | 0.66 | 0.378889 |
Target: 5'- uGGUGcUGGcGCCGCUGCG-CGUgGcCGCGa -3' miRNA: 3'- -CUAC-AUC-CGGCGGCGCaGCGaC-GCGC- -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 19493 | 0.66 | 0.378889 |
Target: 5'- cGGUGggcAGGCCGCUGCGaacCGUggucuUGUGCu -3' miRNA: 3'- -CUACa--UCCGGCGGCGCa--GCG-----ACGCGc -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 14851 | 0.66 | 0.387688 |
Target: 5'- -uUGgcGGCCagcGCCGCa-CGCUGgGCGc -3' miRNA: 3'- cuACauCCGG---CGGCGcaGCGACgCGC- -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 28557 | 0.66 | 0.387688 |
Target: 5'- -----cGGCCGCCGgccaUCGCgGCGCGc -3' miRNA: 3'- cuacauCCGGCGGCgc--AGCGaCGCGC- -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 26205 | 0.67 | 0.321139 |
Target: 5'- cGGUGUAGGUCGagGCGUUuuucaUGCGCGc -3' miRNA: 3'- -CUACAUCCGGCggCGCAGcg---ACGCGC- -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 447 | 0.67 | 0.31421 |
Target: 5'- ---uUGGGCUGCUGCGcggccagcuugcgggCGCUGuCGCGg -3' miRNA: 3'- cuacAUCCGGCGGCGCa--------------GCGAC-GCGC- -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 16067 | 0.75 | 0.08964 |
Target: 5'- --cGU-GGCCGCCGCG-CGCgGCGCc -3' miRNA: 3'- cuaCAuCCGGCGGCGCaGCGaCGCGc -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 8140 | 0.74 | 0.094558 |
Target: 5'- -uUGUGGGCgugcgggugucggCGCUGCGUCcCUGCGCGu -3' miRNA: 3'- cuACAUCCG-------------GCGGCGCAGcGACGCGC- -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 11153 | 0.71 | 0.169045 |
Target: 5'- -cUGcUGGGCCGCCuGCGcaCGUUGCGUGc -3' miRNA: 3'- cuAC-AUCCGGCGG-CGCa-GCGACGCGC- -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 27837 | 0.7 | 0.203624 |
Target: 5'- cGcgGUGGcGCCgGCCGCGcCGCUGCuCa -3' miRNA: 3'- -CuaCAUC-CGG-CGGCGCaGCGACGcGc -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 10332 | 0.69 | 0.214575 |
Target: 5'- ----cAGGCCGuaGcCGUCGCUGCgGCGu -3' miRNA: 3'- cuacaUCCGGCggC-GCAGCGACG-CGC- -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 18077 | 0.69 | 0.237995 |
Target: 5'- cGUGcUGGGCCGCCGaa--GCcgGCGCGa -3' miRNA: 3'- cUAC-AUCCGGCGGCgcagCGa-CGCGC- -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 3880 | 0.68 | 0.284082 |
Target: 5'- -cUGUAGGCCGCgcUGcCGUCGCcGC-CGa -3' miRNA: 3'- cuACAUCCGGCG--GC-GCAGCGaCGcGC- -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 21146 | 0.68 | 0.286918 |
Target: 5'- -----uGGCCGCCGUGUCcGCgcccugguucaacaGCGCGg -3' miRNA: 3'- cuacauCCGGCGGCGCAG-CGa-------------CGCGC- -5' |
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26527 | 3' | -60.6 | NC_005357.1 | + | 4634 | 0.66 | 0.361698 |
Target: 5'- gGAUGcUGGGCCacGCUGCGUCgGCcauCGCGu -3' miRNA: 3'- -CUAC-AUCCGG--CGGCGCAG-CGac-GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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