Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26527 | 5' | -55.7 | NC_005357.1 | + | 393 | 0.66 | 0.607226 |
Target: 5'- aGCGCGGcCAGCGCGCGacuguuGAGCa-GCAc -3' miRNA: 3'- gCGUGCU-GUCGUGCGCc-----CUUGaaCGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 456 | 0.71 | 0.328172 |
Target: 5'- uGCGCGGcCAGCuuGCGGGcGCUgucGCGg -3' miRNA: 3'- gCGUGCU-GUCGugCGCCCuUGAa--CGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 491 | 0.71 | 0.344775 |
Target: 5'- uGCcuCGGCAGCAuacugcgcCGCGGcGGCUUGCAg -3' miRNA: 3'- gCGu-GCUGUCGU--------GCGCCcUUGAACGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 4800 | 0.68 | 0.466644 |
Target: 5'- aCGC-CGGCuGGCGCuGCGGGAuuGCUggccgGCGa -3' miRNA: 3'- -GCGuGCUG-UCGUG-CGCCCU--UGAa----CGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 5736 | 0.68 | 0.497825 |
Target: 5'- uCGCACaGAucgccCAGCGCGcCGGGcAGCgagUGCGc -3' miRNA: 3'- -GCGUG-CU-----GUCGUGC-GCCC-UUGa--ACGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 8414 | 0.68 | 0.466644 |
Target: 5'- gGCAgCGAgCAGUuCGCGGGGGCgucGCGg -3' miRNA: 3'- gCGU-GCU-GUCGuGCGCCCUUGaa-CGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 9325 | 0.71 | 0.312167 |
Target: 5'- gCGCACGuCGGCGCgGCGGGcGGCggcauccuuUUGCAg -3' miRNA: 3'- -GCGUGCuGUCGUG-CGCCC-UUG---------AACGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 9383 | 1.08 | 0.000698 |
Target: 5'- gCGCACGACAGCACGCGGGAACUUGCAc -3' miRNA: 3'- -GCGUGCUGUCGUGCGCCCUUGAACGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 9734 | 0.66 | 0.573776 |
Target: 5'- uGCACGcgGCgAGCACGuCGGcGAACU-GCu -3' miRNA: 3'- gCGUGC--UG-UCGUGC-GCC-CUUGAaCGu -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 13001 | 0.7 | 0.353301 |
Target: 5'- gGCGCGACgugcgAGCGCGUGGGcAACgcGCc -3' miRNA: 3'- gCGUGCUG-----UCGUGCGCCC-UUGaaCGu -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 13290 | 0.66 | 0.596041 |
Target: 5'- aGCGCcgauuGCAGCGCGCcGGGGCcgGCGu -3' miRNA: 3'- gCGUGc----UGUCGUGCGcCCUUGaaCGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 14612 | 0.7 | 0.38887 |
Target: 5'- cCGCG-GGCAGCGCGCGcGaGGACgUGCu -3' miRNA: 3'- -GCGUgCUGUCGUGCGC-C-CUUGaACGu -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 15272 | 0.66 | 0.618434 |
Target: 5'- -cCGCGuGCGGCGCGUGgGGGACUucgagugaUGCGc -3' miRNA: 3'- gcGUGC-UGUCGUGCGC-CCUUGA--------ACGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 17483 | 0.67 | 0.562713 |
Target: 5'- uGCACGaACAGCG-GCGaGAACUUGg- -3' miRNA: 3'- gCGUGC-UGUCGUgCGCcCUUGAACgu -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 20826 | 0.74 | 0.199167 |
Target: 5'- uGCGCGAgGGCuuuccgucauCGCGGGAACUgaccgacUGCAc -3' miRNA: 3'- gCGUGCUgUCGu---------GCGCCCUUGA-------ACGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 21874 | 0.66 | 0.629654 |
Target: 5'- -uCAUGAgCAGCAaGCGGGGGCgccGCAu -3' miRNA: 3'- gcGUGCU-GUCGUgCGCCCUUGaa-CGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 22533 | 0.68 | 0.497825 |
Target: 5'- aGCACGcGCAGCGCGCGcgugccGGugUUGUc -3' miRNA: 3'- gCGUGC-UGUCGUGCGCc-----CUugAACGu -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 22848 | 0.67 | 0.551709 |
Target: 5'- aGC-CGACAGCGCGCGcugcGAAUUggGCu -3' miRNA: 3'- gCGuGCUGUCGUGCGCc---CUUGAa-CGu -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 24072 | 0.67 | 0.529906 |
Target: 5'- gCGCACaguaGCGGCgaccGCGCGGGGcACggGCAc -3' miRNA: 3'- -GCGUGc---UGUCG----UGCGCCCU-UGaaCGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 25745 | 0.69 | 0.436502 |
Target: 5'- --gGCGGCAGCACGCuGGGcGCgcUGCu -3' miRNA: 3'- gcgUGCUGUCGUGCG-CCCuUGa-ACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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