miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26527 5' -55.7 NC_005357.1 + 4800 0.68 0.466644
Target:  5'- aCGC-CGGCuGGCGCuGCGGGAuuGCUggccgGCGa -3'
miRNA:   3'- -GCGuGCUG-UCGUG-CGCCCU--UGAa----CGU- -5'
26527 5' -55.7 NC_005357.1 + 29599 0.69 0.445428
Target:  5'- gCGCGCGGuuugccaguugucCAGCGC-CGGGcGCUUGUg -3'
miRNA:   3'- -GCGUGCU-------------GUCGUGcGCCCuUGAACGu -5'
26527 5' -55.7 NC_005357.1 + 25745 0.69 0.436502
Target:  5'- --gGCGGCAGCACGCuGGGcGCgcUGCu -3'
miRNA:   3'- gcgUGCUGUCGUGCG-CCCuUGa-ACGu -5'
26527 5' -55.7 NC_005357.1 + 14612 0.7 0.38887
Target:  5'- cCGCG-GGCAGCGCGCGcGaGGACgUGCu -3'
miRNA:   3'- -GCGUgCUGUCGUGCGC-C-CUUGaACGu -5'
26527 5' -55.7 NC_005357.1 + 39157 0.7 0.361974
Target:  5'- aGCACGGCGuuGCGCGGGAAa-UGUu -3'
miRNA:   3'- gCGUGCUGUcgUGCGCCCUUgaACGu -5'
26527 5' -55.7 NC_005357.1 + 13001 0.7 0.353301
Target:  5'- gGCGCGACgugcgAGCGCGUGGGcAACgcGCc -3'
miRNA:   3'- gCGUGCUG-----UCGUGCGCCC-UUGaaCGu -5'
26527 5' -55.7 NC_005357.1 + 491 0.71 0.344775
Target:  5'- uGCcuCGGCAGCAuacugcgcCGCGGcGGCUUGCAg -3'
miRNA:   3'- gCGu-GCUGUCGU--------GCGCCcUUGAACGU- -5'
26527 5' -55.7 NC_005357.1 + 35807 0.71 0.336399
Target:  5'- gCGCGCGA-AGCugGCGGcGGACUacgccaUGCu -3'
miRNA:   3'- -GCGUGCUgUCGugCGCC-CUUGA------ACGu -5'
26527 5' -55.7 NC_005357.1 + 26370 0.71 0.336399
Target:  5'- gCGCGCGGCGGcCACGUGcGcGAACUgGCc -3'
miRNA:   3'- -GCGUGCUGUC-GUGCGC-C-CUUGAaCGu -5'
26527 5' -55.7 NC_005357.1 + 456 0.71 0.328172
Target:  5'- uGCGCGGcCAGCuuGCGGGcGCUgucGCGg -3'
miRNA:   3'- gCGUGCU-GUCGugCGCCCuUGAa--CGU- -5'
26527 5' -55.7 NC_005357.1 + 9325 0.71 0.312167
Target:  5'- gCGCACGuCGGCGCgGCGGGcGGCggcauccuuUUGCAg -3'
miRNA:   3'- -GCGUGCuGUCGUG-CGCCC-UUG---------AACGU- -5'
26527 5' -55.7 NC_005357.1 + 20826 0.74 0.199167
Target:  5'- uGCGCGAgGGCuuuccgucauCGCGGGAACUgaccgacUGCAc -3'
miRNA:   3'- gCGUGCUgUCGu---------GCGCCCUUGA-------ACGU- -5'
26527 5' -55.7 NC_005357.1 + 9383 1.08 0.000698
Target:  5'- gCGCACGACAGCACGCGGGAACUUGCAc -3'
miRNA:   3'- -GCGUGCUGUCGUGCGCCCUUGAACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.