miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26528 5' -55.9 NC_005357.1 + 2036 0.67 0.561454
Target:  5'- -cAUACCGgccgCCUCGgCGACGauggauucaagGGCCUg -3'
miRNA:   3'- acUAUGGCa---GGAGCgGCUGCa----------UCGGG- -5'
26528 5' -55.9 NC_005357.1 + 16780 0.66 0.605258
Target:  5'- aUGAcGCCGgcagaaCUCGCCGAgGUGGaCgCg -3'
miRNA:   3'- -ACUaUGGCag----GAGCGGCUgCAUC-GgG- -5'
26528 5' -55.9 NC_005357.1 + 8957 0.66 0.616289
Target:  5'- cGGUgGCCGUgCCgcgauaGCCaGCGUGGCCg -3'
miRNA:   3'- aCUA-UGGCA-GGag----CGGcUGCAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 27893 0.66 0.616289
Target:  5'- cGcUGuuGUCCggCGCCGgcgACGUGGCUg -3'
miRNA:   3'- aCuAUggCAGGa-GCGGC---UGCAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 6422 0.66 0.627334
Target:  5'- cGAacUCGUCCUCGCUcGCGacaccaccGCCCg -3'
miRNA:   3'- aCUauGGCAGGAGCGGcUGCau------CGGG- -5'
26528 5' -55.9 NC_005357.1 + 1859 0.66 0.65384
Target:  5'- ---cGCCGUCUugcagguucagcccgUgGCCGGCGcUGGCCg -3'
miRNA:   3'- acuaUGGCAGG---------------AgCGGCUGC-AUCGGg -5'
26528 5' -55.9 NC_005357.1 + 21725 0.69 0.466897
Target:  5'- gGGUGcCCGUgCCUCGUCGucc-AGCCCa -3'
miRNA:   3'- aCUAU-GGCA-GGAGCGGCugcaUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 13399 0.69 0.466897
Target:  5'- gGGUAUCGaCCUgGCCGaagcGCGgcGCCUg -3'
miRNA:   3'- aCUAUGGCaGGAgCGGC----UGCauCGGG- -5'
26528 5' -55.9 NC_005357.1 + 6542 0.69 0.466897
Target:  5'- cGAUGCUGg---CGuuGACGUagcAGCCCg -3'
miRNA:   3'- aCUAUGGCaggaGCggCUGCA---UCGGG- -5'
26528 5' -55.9 NC_005357.1 + 33097 0.77 0.142138
Target:  5'- gGAUGCCG-CCgcccgccgCGCCGACGUGcGCCg -3'
miRNA:   3'- aCUAUGGCaGGa-------GCGGCUGCAU-CGGg -5'
26528 5' -55.9 NC_005357.1 + 18480 0.77 0.150242
Target:  5'- -aAUGCCGaCCUCGCCGGgCGUGcGCCUg -3'
miRNA:   3'- acUAUGGCaGGAGCGGCU-GCAU-CGGG- -5'
26528 5' -55.9 NC_005357.1 + 24023 0.75 0.208206
Target:  5'- ---cGCCacCUUCGCCGACGUGGCCg -3'
miRNA:   3'- acuaUGGcaGGAGCGGCUGCAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 11453 0.72 0.322274
Target:  5'- aGAUcguccACCGUCa-CGCCGAaGUAGUCCg -3'
miRNA:   3'- aCUA-----UGGCAGgaGCGGCUgCAUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 15420 0.71 0.330265
Target:  5'- cGGUACauaUCCgCGCCGcUGUAGCCCc -3'
miRNA:   3'- aCUAUGgc-AGGaGCGGCuGCAUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 16165 0.71 0.355109
Target:  5'- cGA-GCCGaCCagGCCGGCGgguGCCCg -3'
miRNA:   3'- aCUaUGGCaGGagCGGCUGCau-CGGG- -5'
26528 5' -55.9 NC_005357.1 + 16407 0.71 0.363677
Target:  5'- uUGAUGCCa---UCGCCGAgGaAGCCCu -3'
miRNA:   3'- -ACUAUGGcaggAGCGGCUgCaUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 4857 0.71 0.363677
Target:  5'- aGcgGCCagcuuccaaUCCUCGCCGGCG-AGCCa -3'
miRNA:   3'- aCuaUGGc--------AGGAGCGGCUGCaUCGGg -5'
26528 5' -55.9 NC_005357.1 + 8231 0.71 0.363677
Target:  5'- cGcgGCCGUgcCCUCGUCGGCGaAGUCg -3'
miRNA:   3'- aCuaUGGCA--GGAGCGGCUGCaUCGGg -5'
26528 5' -55.9 NC_005357.1 + 36043 0.7 0.38124
Target:  5'- cGGgccgGCCGgccugcgCCUgauUGCCGACGUGGgCCg -3'
miRNA:   3'- aCUa---UGGCa------GGA---GCGGCUGCAUCgGG- -5'
26528 5' -55.9 NC_005357.1 + 8166 0.69 0.427548
Target:  5'- aUGAUGCgGcCCaggaaggCGCUGGCGUccuGCCCg -3'
miRNA:   3'- -ACUAUGgCaGGa------GCGGCUGCAu--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.