miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26530 5' -57.6 NC_005357.1 + 17857 0.66 0.478814
Target:  5'- cGUGGCCUcgucGC-CCAGGua--GGCCAGg -3'
miRNA:   3'- -UACCGGAa---CGuGGUCCugagCUGGUC- -5'
26530 5' -57.6 NC_005357.1 + 36912 0.66 0.468516
Target:  5'- -cGGCCUggaacuaccagGCACCGaguuggcgcuauGGcacCUCGACCAGa -3'
miRNA:   3'- uaCCGGAa----------CGUGGU------------CCu--GAGCUGGUC- -5'
26530 5' -57.6 NC_005357.1 + 40662 0.66 0.458333
Target:  5'- -cGGCCcgacGCGCCAGG-CgcaGGCCGGc -3'
miRNA:   3'- uaCCGGaa--CGUGGUCCuGag-CUGGUC- -5'
26530 5' -57.6 NC_005357.1 + 13077 0.66 0.448269
Target:  5'- -aGGCCaccgGCGCgugguucgAGGACUUGGCCGGc -3'
miRNA:   3'- uaCCGGaa--CGUGg-------UCCUGAGCUGGUC- -5'
26530 5' -57.6 NC_005357.1 + 40465 0.66 0.447269
Target:  5'- -cGuGCCUUcCcCCAGGgccgcgcGCUCGACCAGa -3'
miRNA:   3'- uaC-CGGAAcGuGGUCC-------UGAGCUGGUC- -5'
26530 5' -57.6 NC_005357.1 + 11016 0.67 0.406448
Target:  5'- uUGGCgUcgaugaacaccugcUGCACCGGGccguuCUCGGCCGc -3'
miRNA:   3'- uACCGgA--------------ACGUGGUCCu----GAGCUGGUc -5'
26530 5' -57.6 NC_005357.1 + 4576 0.67 0.390603
Target:  5'- -aGGCgCUgcucggUGCGCCAGGcgaggaacuGCUCGGCCu- -3'
miRNA:   3'- uaCCG-GA------ACGUGGUCC---------UGAGCUGGuc -5'
26530 5' -57.6 NC_005357.1 + 24485 0.67 0.390603
Target:  5'- uUGGCC-UGCGCCAGGAagUCGuagggGCUGGc -3'
miRNA:   3'- uACCGGaACGUGGUCCUg-AGC-----UGGUC- -5'
26530 5' -57.6 NC_005357.1 + 12400 0.68 0.372486
Target:  5'- cGUGGUgUgggGCACCaAGGGCgCGGCCGu -3'
miRNA:   3'- -UACCGgAa--CGUGG-UCCUGaGCUGGUc -5'
26530 5' -57.6 NC_005357.1 + 13994 0.68 0.346402
Target:  5'- cUGGCCUcgUGCugCAcaGCUUGACCAc -3'
miRNA:   3'- uACCGGA--ACGugGUccUGAGCUGGUc -5'
26530 5' -57.6 NC_005357.1 + 18461 0.68 0.338003
Target:  5'- -cGGUCgcgGCGCCGGcGGCgUCGGCCGa -3'
miRNA:   3'- uaCCGGaa-CGUGGUC-CUG-AGCUGGUc -5'
26530 5' -57.6 NC_005357.1 + 27700 0.68 0.338003
Target:  5'- -aGGCCgcGCGCCGGcagcGGCUCGccGCCGGu -3'
miRNA:   3'- uaCCGGaaCGUGGUC----CUGAGC--UGGUC- -5'
26530 5' -57.6 NC_005357.1 + 25312 0.69 0.329752
Target:  5'- -cGGCCcUGcCACCGGcGCUCGucGCCGGg -3'
miRNA:   3'- uaCCGGaAC-GUGGUCcUGAGC--UGGUC- -5'
26530 5' -57.6 NC_005357.1 + 17104 0.69 0.329752
Target:  5'- -cGGCCggGCcUUGGGGCUUGACCAc -3'
miRNA:   3'- uaCCGGaaCGuGGUCCUGAGCUGGUc -5'
26530 5' -57.6 NC_005357.1 + 14979 0.69 0.321652
Target:  5'- cUGGCauaccaGCGCCAGGGCcugCGGCCGc -3'
miRNA:   3'- uACCGgaa---CGUGGUCCUGa--GCUGGUc -5'
26530 5' -57.6 NC_005357.1 + 26708 0.69 0.321652
Target:  5'- cAUGGCCUcGCGCCAG--UUCGAugcCCAGg -3'
miRNA:   3'- -UACCGGAaCGUGGUCcuGAGCU---GGUC- -5'
26530 5' -57.6 NC_005357.1 + 6287 0.7 0.262215
Target:  5'- uUGGCUgggGCGCCGGGGCUUaucuCCGGu -3'
miRNA:   3'- uACCGGaa-CGUGGUCCUGAGcu--GGUC- -5'
26530 5' -57.6 NC_005357.1 + 1666 0.71 0.229803
Target:  5'- -aGGUCUUGCACCucgcgcuuGGACUCGcggcgaGCCAu -3'
miRNA:   3'- uaCCGGAACGUGGu-------CCUGAGC------UGGUc -5'
26530 5' -57.6 NC_005357.1 + 11267 0.71 0.229803
Target:  5'- uUGcGCUgcgGCGCUGGGacGCUCGGCCAGg -3'
miRNA:   3'- uAC-CGGaa-CGUGGUCC--UGAGCUGGUC- -5'
26530 5' -57.6 NC_005357.1 + 5759 0.73 0.170322
Target:  5'- -gGGCagcgagUGCGCCAGGGCcUUGACCAu -3'
miRNA:   3'- uaCCGga----ACGUGGUCCUG-AGCUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.