miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26533 3' -54.2 NC_005357.1 + 4833 0.68 0.63003
Target:  5'- gGCGCCgUCGU-CGAAUUCACggaaaGCGGc -3'
miRNA:   3'- gUGCGGaAGCAcGCUUAGGUGg----UGCC- -5'
26533 3' -54.2 NC_005357.1 + 16687 0.68 0.63003
Target:  5'- gCGCGCCcagCGUGCugccgccgguGAGgacgacgaccCCGCCGCGGg -3'
miRNA:   3'- -GUGCGGaa-GCACG----------CUUa---------GGUGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 5752 0.68 0.618857
Target:  5'- gCGCGCCgggcaGCGAGUgCGCCAgGGc -3'
miRNA:   3'- -GUGCGGaagcaCGCUUAgGUGGUgCC- -5'
26533 3' -54.2 NC_005357.1 + 30994 0.68 0.618857
Target:  5'- uCGCGCCUuaUCG-GCGA--CCugCACGc -3'
miRNA:   3'- -GUGCGGA--AGCaCGCUuaGGugGUGCc -5'
26533 3' -54.2 NC_005357.1 + 33112 0.68 0.607697
Target:  5'- cCGCGCCgaCGUGCG---CCGCCA-GGu -3'
miRNA:   3'- -GUGCGGaaGCACGCuuaGGUGGUgCC- -5'
26533 3' -54.2 NC_005357.1 + 15571 0.68 0.60101
Target:  5'- gGCGCCgucagugacgacgCGcUGCGGAUgCACCGCGc -3'
miRNA:   3'- gUGCGGaa-----------GC-ACGCUUAgGUGGUGCc -5'
26533 3' -54.2 NC_005357.1 + 19833 0.69 0.574383
Target:  5'- gGCGCuuCUUCGUGCaaGAUCgcaACCGCGGc -3'
miRNA:   3'- gUGCG--GAAGCACGc-UUAGg--UGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 30076 0.69 0.563365
Target:  5'- ---uCCUUUGUGCGGcgCCcgggcGCCACGGc -3'
miRNA:   3'- gugcGGAAGCACGCUuaGG-----UGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 22563 0.69 0.51994
Target:  5'- gACGCCUUCGgcacgccCGAAcUCACCACGc -3'
miRNA:   3'- gUGCGGAAGCac-----GCUUaGGUGGUGCc -5'
26533 3' -54.2 NC_005357.1 + 26596 0.7 0.509283
Target:  5'- aCACGgaCggCGUGUucGAGUCCugCGCGGu -3'
miRNA:   3'- -GUGCg-GaaGCACG--CUUAGGugGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 33485 0.7 0.498718
Target:  5'- gCACgGCCacCGcugGCGAAUCCGgCACGGc -3'
miRNA:   3'- -GUG-CGGaaGCa--CGCUUAGGUgGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 33437 0.7 0.498718
Target:  5'- gCACgGCCacCGcugGCGAAUCCGgCACGGc -3'
miRNA:   3'- -GUG-CGGaaGCa--CGCUUAGGUgGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 23419 0.71 0.447484
Target:  5'- gCGCGCCggUCaGUGCGAcgCCGgC-CGGg -3'
miRNA:   3'- -GUGCGGa-AG-CACGCUuaGGUgGuGCC- -5'
26533 3' -54.2 NC_005357.1 + 10877 0.71 0.418182
Target:  5'- gCACGCCUUCccGCGAA-CCGaggcgcuguuuCCACGGc -3'
miRNA:   3'- -GUGCGGAAGcaCGCUUaGGU-----------GGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 27574 0.73 0.346067
Target:  5'- gGCGCCcagCGUGCGGcgcuggCCGCCAaCGGc -3'
miRNA:   3'- gUGCGGaa-GCACGCUua----GGUGGU-GCC- -5'
26533 3' -54.2 NC_005357.1 + 3677 1.1 0.000976
Target:  5'- cCACGCCUUCGUGCGAAUCCACCACGGc -3'
miRNA:   3'- -GUGCGGAAGCACGCUUAGGUGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.