Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26534 | 3' | -60.3 | NC_005357.1 | + | 41976 | 0.66 | 0.356501 |
Target: 5'- cGCCCGcaagcuGGCCGCGCagCA-GCCCaaCGAc -3' miRNA: 3'- -CGGGC------UCGGCGUGg-GUaCGGGaaGCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 40717 | 0.66 | 0.356501 |
Target: 5'- cGCCCucGCCgGCACgCcgGCCCacggCGAa -3' miRNA: 3'- -CGGGcuCGG-CGUGgGuaCGGGaa--GCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 39985 | 0.7 | 0.216882 |
Target: 5'- cGCCUGGGCCGCAgUUUcgGCgCCUUCa- -3' miRNA: 3'- -CGGGCUCGGCGU-GGGuaCG-GGAAGcu -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 39699 | 0.67 | 0.332037 |
Target: 5'- aGCgCCGGGCCGCGCUCAagcGUCCg---- -3' miRNA: 3'- -CG-GGCUCGGCGUGGGUa--CGGGaagcu -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 37861 | 0.71 | 0.185223 |
Target: 5'- cGCaCCGAGCaGCGCCUcgGCgaCUUCGGc -3' miRNA: 3'- -CG-GGCUCGgCGUGGGuaCGg-GAAGCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 32623 | 0.67 | 0.332037 |
Target: 5'- gGCCgCGAcGCCGCGgUCGcUGUCCUgUCGAa -3' miRNA: 3'- -CGG-GCU-CGGCGUgGGU-ACGGGA-AGCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 32504 | 0.66 | 0.40911 |
Target: 5'- aGgCCGAGaacuCCGCGCCCGUGCaggCUggUGAu -3' miRNA: 3'- -CgGGCUC----GGCGUGGGUACGg--GAa-GCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 32113 | 0.67 | 0.324162 |
Target: 5'- cGCCCuGGCCGCugCCGaccucgacGCCCc-CGAa -3' miRNA: 3'- -CGGGcUCGGCGugGGUa-------CGGGaaGCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 31182 | 0.66 | 0.40001 |
Target: 5'- aGCaCGGGCCGCGCaCGuucUGCCUgacggUCGAg -3' miRNA: 3'- -CGgGCUCGGCGUGgGU---ACGGGa----AGCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 26046 | 0.66 | 0.356501 |
Target: 5'- aGCCCGcgcggcGGgCGCGCuCCAUGCgCUcggCGAa -3' miRNA: 3'- -CGGGC------UCgGCGUG-GGUACGgGAa--GCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 24779 | 0.66 | 0.373499 |
Target: 5'- uGCCaCGGGUCGUcCUCgAUGCCCgcgUUGAa -3' miRNA: 3'- -CGG-GCUCGGCGuGGG-UACGGGa--AGCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 24742 | 0.71 | 0.185223 |
Target: 5'- gGCCCGAGUgGCgcuucgccuacGCCCA-GCCCgcCGAc -3' miRNA: 3'- -CGGGCUCGgCG-----------UGGGUaCGGGaaGCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 24426 | 0.66 | 0.40001 |
Target: 5'- gGCCCGAuuugucgguGCCGCGCgCG-GCCUcggCGAc -3' miRNA: 3'- -CGGGCU---------CGGCGUGgGUaCGGGaa-GCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 18858 | 0.67 | 0.324162 |
Target: 5'- aGgCCGGGCg--GCCCAUGCCCacgUUCGGg -3' miRNA: 3'- -CgGGCUCGgcgUGGGUACGGG---AAGCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 17605 | 0.66 | 0.39104 |
Target: 5'- uGCCCGAGCCauugcGCAgCCAgaUGCUgUaCGGc -3' miRNA: 3'- -CGGGCUCGG-----CGUgGGU--ACGGgAaGCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 16161 | 0.69 | 0.232583 |
Target: 5'- uGCgCGAGCCgaccaggccggcggGUGCCCGUGCCUUcggCGAc -3' miRNA: 3'- -CGgGCUCGG--------------CGUGGGUACGGGAa--GCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 14703 | 0.7 | 0.216882 |
Target: 5'- gGCCUGcAGuuGCGCcuCCAUGCCCUgCGc -3' miRNA: 3'- -CGGGC-UCggCGUG--GGUACGGGAaGCu -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 14351 | 0.66 | 0.40911 |
Target: 5'- --aCGAcGCCGCGgCCAccUGCCCgcugUUCGAg -3' miRNA: 3'- cggGCU-CGGCGUgGGU--ACGGG----AAGCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 12919 | 0.69 | 0.253061 |
Target: 5'- cGCUCG-GCCGCGCCCAUaacgcuagucaGCUUcUCGGg -3' miRNA: 3'- -CGGGCuCGGCGUGGGUA-----------CGGGaAGCU- -5' |
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26534 | 3' | -60.3 | NC_005357.1 | + | 12730 | 0.66 | 0.380451 |
Target: 5'- gGCCCGuuggugcuggguGCCGCGCCCAgacGCUUggCGc -3' miRNA: 3'- -CGGGCu-----------CGGCGUGGGUa--CGGGaaGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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