miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26534 3' -60.3 NC_005357.1 + 32113 0.67 0.324162
Target:  5'- cGCCCuGGCCGCugCCGaccucgacGCCCc-CGAa -3'
miRNA:   3'- -CGGGcUCGGCGugGGUa-------CGGGaaGCU- -5'
26534 3' -60.3 NC_005357.1 + 11083 0.67 0.30883
Target:  5'- uGUCCGGGUCGCGCgCGaGCaCCUugUCGGc -3'
miRNA:   3'- -CGGGCUCGGCGUGgGUaCG-GGA--AGCU- -5'
26534 3' -60.3 NC_005357.1 + 11187 0.68 0.301374
Target:  5'- cGCCCGgcucguagcugGGCCGCGCgCCGggGUUCUUCa- -3'
miRNA:   3'- -CGGGC-----------UCGGCGUG-GGUa-CGGGAAGcu -5'
26534 3' -60.3 NC_005357.1 + 12919 0.69 0.253061
Target:  5'- cGCUCG-GCCGCGCCCAUaacgcuagucaGCUUcUCGGg -3'
miRNA:   3'- -CGGGCuCGGCGUGGGUA-----------CGGGaAGCU- -5'
26534 3' -60.3 NC_005357.1 + 16161 0.69 0.232583
Target:  5'- uGCgCGAGCCgaccaggccggcggGUGCCCGUGCCUUcggCGAc -3'
miRNA:   3'- -CGgGCUCGG--------------CGUGGGUACGGGAa--GCU- -5'
26534 3' -60.3 NC_005357.1 + 39985 0.7 0.216882
Target:  5'- cGCCUGGGCCGCAgUUUcgGCgCCUUCa- -3'
miRNA:   3'- -CGGGCUCGGCGU-GGGuaCG-GGAAGcu -5'
26534 3' -60.3 NC_005357.1 + 14703 0.7 0.216882
Target:  5'- gGCCUGcAGuuGCGCcuCCAUGCCCUgCGc -3'
miRNA:   3'- -CGGGC-UCggCGUG--GGUACGGGAaGCu -5'
26534 3' -60.3 NC_005357.1 + 24742 0.71 0.185223
Target:  5'- gGCCCGAGUgGCgcuucgccuacGCCCA-GCCCgcCGAc -3'
miRNA:   3'- -CGGGCUCGgCG-----------UGGGUaCGGGaaGCU- -5'
26534 3' -60.3 NC_005357.1 + 37861 0.71 0.185223
Target:  5'- cGCaCCGAGCaGCGCCUcgGCgaCUUCGGc -3'
miRNA:   3'- -CG-GGCUCGgCGUGGGuaCGg-GAAGCU- -5'
26534 3' -60.3 NC_005357.1 + 802 0.73 0.133947
Target:  5'- uUCCGGcgacgcGCCGCGCCCA-GCCCUUgcCGAa -3'
miRNA:   3'- cGGGCU------CGGCGUGGGUaCGGGAA--GCU- -5'
26534 3' -60.3 NC_005357.1 + 3075 1.1 0.000195
Target:  5'- cGCCCGAGCCGCACCCAUGCCCUUCGAc -3'
miRNA:   3'- -CGGGCUCGGCGUGGGUACGGGAAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.