miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26535 3' -54.9 NC_005357.1 + 15828 0.66 0.682511
Target:  5'- cCGCGCAggacucgaacacGCCguccgUGUCgUgcuggugccacgcgcCGAUCUGUUGCu -3'
miRNA:   3'- -GCGCGU------------CGG-----ACAGgA---------------GCUAGACAACG- -5'
26535 3' -54.9 NC_005357.1 + 31004 0.66 0.67805
Target:  5'- aCGCGCGaCCUGUCCaCGggCU--UGCc -3'
miRNA:   3'- -GCGCGUcGGACAGGaGCuaGAcaACG- -5'
26535 3' -54.9 NC_005357.1 + 3929 0.66 0.67805
Target:  5'- aCGCGCuGCC-GUCCgcgaUGGUCacGUUGUa -3'
miRNA:   3'- -GCGCGuCGGaCAGGa---GCUAGa-CAACG- -5'
26535 3' -54.9 NC_005357.1 + 8252 0.66 0.666865
Target:  5'- gCGCuucaaGCGGCCcagGUgUUCGAUCUGacGCa -3'
miRNA:   3'- -GCG-----CGUCGGa--CAgGAGCUAGACaaCG- -5'
26535 3' -54.9 NC_005357.1 + 42271 0.66 0.666865
Target:  5'- gCGCgGCAGCUUGggcaCUCGAUUgaaaUGUuucUGCg -3'
miRNA:   3'- -GCG-CGUCGGACag--GAGCUAG----ACA---ACG- -5'
26535 3' -54.9 NC_005357.1 + 12205 0.66 0.644406
Target:  5'- cCGCGCuGCCUGcCCcUGGUCgGgacGCa -3'
miRNA:   3'- -GCGCGuCGGACaGGaGCUAGaCaa-CG- -5'
26535 3' -54.9 NC_005357.1 + 13649 0.67 0.610655
Target:  5'- gGCGCGGCCguccaUGUCCUUGGUgauaUGaccGCg -3'
miRNA:   3'- gCGCGUCGG-----ACAGGAGCUAg---ACaa-CG- -5'
26535 3' -54.9 NC_005357.1 + 29479 0.67 0.59943
Target:  5'- gCGCGCGGCCaGUUCcgcgUCGGUCg--UGUc -3'
miRNA:   3'- -GCGCGUCGGaCAGG----AGCUAGacaACG- -5'
26535 3' -54.9 NC_005357.1 + 22545 0.67 0.565968
Target:  5'- gCGCGCGuGCCggUGUUgUCGAggaugUUGUUGUg -3'
miRNA:   3'- -GCGCGU-CGG--ACAGgAGCUa----GACAACG- -5'
26535 3' -54.9 NC_005357.1 + 20783 0.67 0.565968
Target:  5'- uCGCGCGGCUgcacGUCCaugucggUGAUCUGcaaaucgacaUUGCg -3'
miRNA:   3'- -GCGCGUCGGa---CAGGa------GCUAGAC----------AACG- -5'
26535 3' -54.9 NC_005357.1 + 8229 0.68 0.543925
Target:  5'- uGCGCGGCCgUGcCCUCG-UCg---GCg -3'
miRNA:   3'- gCGCGUCGG-ACaGGAGCuAGacaaCG- -5'
26535 3' -54.9 NC_005357.1 + 20671 0.68 0.543925
Target:  5'- cCGgGCGGCCUGUCCU--AUgUGgacGCg -3'
miRNA:   3'- -GCgCGUCGGACAGGAgcUAgACaa-CG- -5'
26535 3' -54.9 NC_005357.1 + 25439 0.69 0.479743
Target:  5'- uGCGCuGCaCgaaGcCCUCGGUCUGU-GCu -3'
miRNA:   3'- gCGCGuCG-Ga--CaGGAGCUAGACAaCG- -5'
26535 3' -54.9 NC_005357.1 + 8591 0.7 0.429217
Target:  5'- gCGUGCGGCCUgGUgCUgGAUaagcugGUUGCg -3'
miRNA:   3'- -GCGCGUCGGA-CAgGAgCUAga----CAACG- -5'
26535 3' -54.9 NC_005357.1 + 21175 0.71 0.391133
Target:  5'- aGCGCGGCCUG-CUgcgCGGcCUGcUGCu -3'
miRNA:   3'- gCGCGUCGGACaGGa--GCUaGACaACG- -5'
26535 3' -54.9 NC_005357.1 + 14764 0.71 0.346739
Target:  5'- gCGCGCAGCgUGUCggugUCGAUCUGc--- -3'
miRNA:   3'- -GCGCGUCGgACAGg---AGCUAGACaacg -5'
26535 3' -54.9 NC_005357.1 + 24417 0.73 0.298387
Target:  5'- aGCGCAGCCgg-CC-CGAUUUGUcggUGCc -3'
miRNA:   3'- gCGCGUCGGacaGGaGCUAGACA---ACG- -5'
26535 3' -54.9 NC_005357.1 + 27802 0.73 0.27624
Target:  5'- cCGCGCAGCCgcagcacGUCCUCGcgCgcgcUGCc -3'
miRNA:   3'- -GCGCGUCGGa------CAGGAGCuaGaca-ACG- -5'
26535 3' -54.9 NC_005357.1 + 2337 1.12 0.000508
Target:  5'- uCGCGCAGCCUGUCCUCGAUCUGUUGCu -3'
miRNA:   3'- -GCGCGUCGGACAGGAGCUAGACAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.