miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26535 5' -58.6 NC_005357.1 + 26199 0.68 0.349059
Target:  5'- uGGCuuCGGUguaggUCGAGGCGUuuuucauGCGcGCAg -3'
miRNA:   3'- gCCGuuGCCA-----AGCUCCGCG-------UGC-CGUa -5'
26535 5' -58.6 NC_005357.1 + 25776 0.72 0.189121
Target:  5'- gCGGCAACGauggccgCGAuGCGCGCGGCGc -3'
miRNA:   3'- -GCCGUUGCcaa----GCUcCGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 24563 0.66 0.440803
Target:  5'- gCGGCGAUGG--CGAGGCcggcCACGGUc- -3'
miRNA:   3'- -GCCGUUGCCaaGCUCCGc---GUGCCGua -5'
26535 5' -58.6 NC_005357.1 + 22071 0.67 0.393653
Target:  5'- gGGUcGCGGUc---GGCGCGCGGCu- -3'
miRNA:   3'- gCCGuUGCCAagcuCCGCGUGCCGua -5'
26535 5' -58.6 NC_005357.1 + 19331 0.69 0.280175
Target:  5'- aGGC-GCGGUcuUCGgacAGGCGCcagGCGGCGg -3'
miRNA:   3'- gCCGuUGCCA--AGC---UCCGCG---UGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 18666 0.67 0.366978
Target:  5'- gCGGCGcauCGGccCGGuGGCGC-CGGCAUg -3'
miRNA:   3'- -GCCGUu--GCCaaGCU-CCGCGuGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 18523 0.66 0.440803
Target:  5'- cCGGCAuggaagccGCGGg-CGuGGCGCACuuccuuGGCGUa -3'
miRNA:   3'- -GCCGU--------UGCCaaGCuCCGCGUG------CCGUA- -5'
26535 5' -58.6 NC_005357.1 + 18456 0.67 0.393653
Target:  5'- -cGUGACGG-UCGcGGCGCcgGCGGCGUc -3'
miRNA:   3'- gcCGUUGCCaAGCuCCGCG--UGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 18271 0.72 0.17436
Target:  5'- gCGcGCAGCcg-UCGAGGCGCugGGCc- -3'
miRNA:   3'- -GC-CGUUGccaAGCUCCGCGugCCGua -5'
26535 5' -58.6 NC_005357.1 + 17687 0.7 0.266264
Target:  5'- -aGCAugGG-UCGAGGcCGCGCaGGCGc -3'
miRNA:   3'- gcCGUugCCaAGCUCC-GCGUG-CCGUa -5'
26535 5' -58.6 NC_005357.1 + 16292 0.66 0.450613
Target:  5'- aGGCuaccCGGUcgUCGucGCGCACGGgAa -3'
miRNA:   3'- gCCGuu--GCCA--AGCucCGCGUGCCgUa -5'
26535 5' -58.6 NC_005357.1 + 15282 0.69 0.309717
Target:  5'- -nGCGugGGggacUUCGAGugauGCGCGCGGCGUc -3'
miRNA:   3'- gcCGUugCC----AAGCUC----CGCGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 15250 0.74 0.136074
Target:  5'- gCGGCAAgGGUcgUCGAGGCauccgcGUGCGGCGc -3'
miRNA:   3'- -GCCGUUgCCA--AGCUCCG------CGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 15127 0.69 0.302115
Target:  5'- gGGCgucGugGGaagccUUCGccaAGGCGCGCGGCGa -3'
miRNA:   3'- gCCG---UugCC-----AAGC---UCCGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 14723 0.67 0.37573
Target:  5'- cCGGCGGCGagcCGcugccGGCGCGCGGCc- -3'
miRNA:   3'- -GCCGUUGCcaaGCu----CCGCGUGCCGua -5'
26535 5' -58.6 NC_005357.1 + 14616 0.7 0.252917
Target:  5'- gGGCAGCGcGcgCGAGGacgugcugcggcUGCGCGGCGc -3'
miRNA:   3'- gCCGUUGC-CaaGCUCC------------GCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 13418 0.66 0.431115
Target:  5'- gCGGUAACGGUUCucGuCcCACGGCAg -3'
miRNA:   3'- -GCCGUUGCCAAGcuCcGcGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 13083 0.67 0.40282
Target:  5'- cCGGCgcgUGGUUCGAGGacuugGC-CGGCGa -3'
miRNA:   3'- -GCCGuu-GCCAAGCUCCg----CGuGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 10871 0.73 0.14789
Target:  5'- uGGCuuCGGUcggcgCGAuGCGCGCGGCGUa -3'
miRNA:   3'- gCCGuuGCCAa----GCUcCGCGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 10099 0.7 0.259521
Target:  5'- gGGCGGCGGUugUCGGGaCGC-CGGCc- -3'
miRNA:   3'- gCCGUUGCCA--AGCUCcGCGuGCCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.