miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26535 5' -58.6 NC_005357.1 + 13083 0.67 0.40282
Target:  5'- cCGGCgcgUGGUUCGAGGacuugGC-CGGCGa -3'
miRNA:   3'- -GCCGuu-GCCAAGCUCCg----CGuGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 31206 0.66 0.450613
Target:  5'- gGGCGuggGCGGgaaCGuGGCggucauGCGCGGCAUu -3'
miRNA:   3'- gCCGU---UGCCaa-GCuCCG------CGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 34795 0.69 0.283026
Target:  5'- cCGGCGugGG-UCGAGccGCGCccccugaccaucaccACGGCAg -3'
miRNA:   3'- -GCCGUugCCaAGCUC--CGCG---------------UGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 26598 0.67 0.412121
Target:  5'- aCGGaCGGCGuGUUCGAGuccUGCGCGGUg- -3'
miRNA:   3'- -GCC-GUUGC-CAAGCUCc--GCGUGCCGua -5'
26535 5' -58.6 NC_005357.1 + 6875 0.66 0.440803
Target:  5'- uGGCcucgaacagAACGGggaaagCGAGGCGCACGuuGUu -3'
miRNA:   3'- gCCG---------UUGCCaa----GCUCCGCGUGCcgUA- -5'
26535 5' -58.6 NC_005357.1 + 8413 0.66 0.460541
Target:  5'- gGGCAGCGagcaGUUCGcggGGGCGuCGCGGa-- -3'
miRNA:   3'- gCCGUUGC----CAAGC---UCCGC-GUGCCgua -5'
26535 5' -58.6 NC_005357.1 + 14723 0.67 0.37573
Target:  5'- cCGGCGGCGagcCGcugccGGCGCGCGGCc- -3'
miRNA:   3'- -GCCGUUGCcaaGCu----CCGCGUGCCGua -5'
26535 5' -58.6 NC_005357.1 + 32701 0.66 0.431115
Target:  5'- aCGaGCAguucgcccGCGGcUUCGAGGCGUAUcucuucgagGGCAa -3'
miRNA:   3'- -GC-CGU--------UGCC-AAGCUCCGCGUG---------CCGUa -5'
26535 5' -58.6 NC_005357.1 + 9943 0.66 0.421554
Target:  5'- uCGGCcuUGGaUUCG-GGCGCAuCGGCc- -3'
miRNA:   3'- -GCCGuuGCC-AAGCuCCGCGU-GCCGua -5'
26535 5' -58.6 NC_005357.1 + 26199 0.68 0.349059
Target:  5'- uGGCuuCGGUguaggUCGAGGCGUuuuucauGCGcGCAg -3'
miRNA:   3'- gCCGuuGCCA-----AGCUCCGCG-------UGC-CGUa -5'
26535 5' -58.6 NC_005357.1 + 25776 0.72 0.189121
Target:  5'- gCGGCAACGauggccgCGAuGCGCGCGGCGc -3'
miRNA:   3'- -GCCGUUGCcaa----GCUcCGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 24563 0.66 0.440803
Target:  5'- gCGGCGAUGG--CGAGGCcggcCACGGUc- -3'
miRNA:   3'- -GCCGUUGCCaaGCUCCGc---GUGCCGua -5'
26535 5' -58.6 NC_005357.1 + 6254 0.71 0.221955
Target:  5'- cCGGUAACGGUgcggUUGAucuGcGCGCugGGCAg -3'
miRNA:   3'- -GCCGUUGCCA----AGCU---C-CGCGugCCGUa -5'
26535 5' -58.6 NC_005357.1 + 16292 0.66 0.450613
Target:  5'- aGGCuaccCGGUcgUCGucGCGCACGGgAa -3'
miRNA:   3'- gCCGuu--GCCA--AGCucCGCGUGCCgUa -5'
26535 5' -58.6 NC_005357.1 + 19331 0.69 0.280175
Target:  5'- aGGC-GCGGUcuUCGgacAGGCGCcagGCGGCGg -3'
miRNA:   3'- gCCGuUGCCA--AGC---UCCGCG---UGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 41218 0.66 0.450613
Target:  5'- -aGCAAUGGgUCGAaaaGGCG-ACGGCGUa -3'
miRNA:   3'- gcCGUUGCCaAGCU---CCGCgUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 22071 0.67 0.393653
Target:  5'- gGGUcGCGGUc---GGCGCGCGGCu- -3'
miRNA:   3'- gCCGuUGCCAagcuCCGCGUGCCGua -5'
26535 5' -58.6 NC_005357.1 + 41960 0.66 0.431115
Target:  5'- uGGCGAUuGUcgaagCGGuGGUGCGCGGCGa -3'
miRNA:   3'- gCCGUUGcCAa----GCU-CCGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 2409 0.67 0.37573
Target:  5'- gGGCGGCaag-CGuAGGUGUACGGCAg -3'
miRNA:   3'- gCCGUUGccaaGC-UCCGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 33162 0.68 0.333392
Target:  5'- gGGCGAUGGUggaguugCGgaaguGGGCGCccuCGGCAc -3'
miRNA:   3'- gCCGUUGCCAa------GC-----UCCGCGu--GCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.