miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26535 5' -58.6 NC_005357.1 + 7597 0.67 0.384622
Target:  5'- uCGGCGACGGUggacagcaCGuGGuCGCGCaGCGc -3'
miRNA:   3'- -GCCGUUGCCAa-------GCuCC-GCGUGcCGUa -5'
26535 5' -58.6 NC_005357.1 + 2409 0.67 0.37573
Target:  5'- gGGCGGCaag-CGuAGGUGUACGGCAg -3'
miRNA:   3'- gCCGUUGccaaGC-UCCGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 14723 0.67 0.37573
Target:  5'- cCGGCGGCGagcCGcugccGGCGCGCGGCc- -3'
miRNA:   3'- -GCCGUUGCcaaGCu----CCGCGUGCCGua -5'
26535 5' -58.6 NC_005357.1 + 18666 0.67 0.366978
Target:  5'- gCGGCGcauCGGccCGGuGGCGC-CGGCAUg -3'
miRNA:   3'- -GCCGUu--GCCaaGCU-CCGCGuGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 26199 0.68 0.349059
Target:  5'- uGGCuuCGGUguaggUCGAGGCGUuuuucauGCGcGCAg -3'
miRNA:   3'- gCCGuuGCCA-----AGCUCCGCG-------UGC-CGUa -5'
26535 5' -58.6 NC_005357.1 + 33162 0.68 0.333392
Target:  5'- gGGCGAUGGUggaguugCGgaaguGGGCGCccuCGGCAc -3'
miRNA:   3'- gCCGUUGCCAa------GC-----UCCGCGu--GCCGUa -5'
26535 5' -58.6 NC_005357.1 + 9320 0.68 0.325355
Target:  5'- uGGCGGCGcacgUCGGcgcGGCGgGCGGCGg -3'
miRNA:   3'- gCCGUUGCca--AGCU---CCGCgUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 34256 0.68 0.325355
Target:  5'- cCGGCAGCa--UCcGGGCGCACGcGCAg -3'
miRNA:   3'- -GCCGUUGccaAGcUCCGCGUGC-CGUa -5'
26535 5' -58.6 NC_005357.1 + 34385 0.68 0.317464
Target:  5'- uCGaGCAGCGGUugagcgUCGAGGCuGuCAcCGGCGa -3'
miRNA:   3'- -GC-CGUUGCCA------AGCUCCG-C-GU-GCCGUa -5'
26535 5' -58.6 NC_005357.1 + 28899 0.68 0.317464
Target:  5'- gCGGcCGACaGUUCGGcGCGgACGGCAa -3'
miRNA:   3'- -GCC-GUUGcCAAGCUcCGCgUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 15282 0.69 0.309717
Target:  5'- -nGCGugGGggacUUCGAGugauGCGCGCGGCGUc -3'
miRNA:   3'- gcCGUugCC----AAGCUC----CGCGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 9062 0.69 0.309717
Target:  5'- uCGGCcACGGUaUCGGGGUGCAuccccucacUGGCc- -3'
miRNA:   3'- -GCCGuUGCCA-AGCUCCGCGU---------GCCGua -5'
26535 5' -58.6 NC_005357.1 + 15127 0.69 0.302115
Target:  5'- gGGCgucGugGGaagccUUCGccaAGGCGCGCGGCGa -3'
miRNA:   3'- gCCG---UugCC-----AAGC---UCCGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 8628 0.69 0.294658
Target:  5'- uCGGCcgcuGCGGUggCGAGGuCGC-CGGCc- -3'
miRNA:   3'- -GCCGu---UGCCAa-GCUCC-GCGuGCCGua -5'
26535 5' -58.6 NC_005357.1 + 34795 0.69 0.283026
Target:  5'- cCGGCGugGG-UCGAGccGCGCccccugaccaucaccACGGCAg -3'
miRNA:   3'- -GCCGUugCCaAGCUC--CGCG---------------UGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 19331 0.69 0.280175
Target:  5'- aGGC-GCGGUcuUCGgacAGGCGCcagGCGGCGg -3'
miRNA:   3'- gCCGuUGCCA--AGC---UCCGCG---UGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 17687 0.7 0.266264
Target:  5'- -aGCAugGG-UCGAGGcCGCGCaGGCGc -3'
miRNA:   3'- gcCGUugCCaAGCUCC-GCGUG-CCGUa -5'
26535 5' -58.6 NC_005357.1 + 26680 0.7 0.265583
Target:  5'- gCGGCAacgagguGCGGUaugUCGA-GCGCAUGGCc- -3'
miRNA:   3'- -GCCGU-------UGCCA---AGCUcCGCGUGCCGua -5'
26535 5' -58.6 NC_005357.1 + 10099 0.7 0.259521
Target:  5'- gGGCGGCGGUugUCGGGaCGC-CGGCc- -3'
miRNA:   3'- gCCGUUGCCA--AGCUCcGCGuGCCGua -5'
26535 5' -58.6 NC_005357.1 + 14616 0.7 0.252917
Target:  5'- gGGCAGCGcGcgCGAGGacgugcugcggcUGCGCGGCGc -3'
miRNA:   3'- gCCGUUGC-CaaGCUCC------------GCGUGCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.