miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26537 5' -55.7 NC_005357.1 + 4523 0.74 0.202371
Target:  5'- --cGUGAACguggcguGCUGGGCGGUCGUGccGCCg -3'
miRNA:   3'- aucUACUUG-------UGGCCCGCCAGUAC--CGG- -5'
26537 5' -55.7 NC_005357.1 + 39765 0.66 0.625782
Target:  5'- -uGAUcGAACACCuGGGCGaccgC-UGGCCc -3'
miRNA:   3'- auCUA-CUUGUGG-CCCGCca--GuACCGG- -5'
26537 5' -55.7 NC_005357.1 + 29041 0.66 0.625782
Target:  5'- cAGGUcGAUACCcaccGGCGGcUCGUaGGCCa -3'
miRNA:   3'- aUCUAcUUGUGGc---CCGCC-AGUA-CCGG- -5'
26537 5' -55.7 NC_005357.1 + 4258 0.66 0.614549
Target:  5'- -cGGUGccggccgucAGCGCCGGcaUGGUgAUGGCCg -3'
miRNA:   3'- auCUAC---------UUGUGGCCc-GCCAgUACCGG- -5'
26537 5' -55.7 NC_005357.1 + 24567 0.66 0.592141
Target:  5'- -cGAUGGcgAgGCCGGccaCGGUCG-GGCCg -3'
miRNA:   3'- auCUACU--UgUGGCCc--GCCAGUaCCGG- -5'
26537 5' -55.7 NC_005357.1 + 22768 0.66 0.574313
Target:  5'- aGGGUGAgggccgauuggucaACGCCcugcGGGcCGGUCAgcauggugccggacUGGCCc -3'
miRNA:   3'- aUCUACU--------------UGUGG----CCC-GCCAGU--------------ACCGG- -5'
26537 5' -55.7 NC_005357.1 + 5460 0.66 0.569874
Target:  5'- -cGAUGuuccCGCCGGGCGG-CGaGGUg -3'
miRNA:   3'- auCUACuu--GUGGCCCGCCaGUaCCGg -5'
26537 5' -55.7 NC_005357.1 + 2221 0.66 0.569874
Target:  5'- cGGGU-AGCACCacgcgcagcaGGCGGcgCGUGGCCg -3'
miRNA:   3'- aUCUAcUUGUGGc---------CCGCCa-GUACCGG- -5'
26537 5' -55.7 NC_005357.1 + 18855 0.67 0.536889
Target:  5'- ----aGAAgGCCGGGCGGccCAUGcCCa -3'
miRNA:   3'- aucuaCUUgUGGCCCGCCa-GUACcGG- -5'
26537 5' -55.7 NC_005357.1 + 34288 0.68 0.472131
Target:  5'- gAGGUGAACggcaaggGCUGGGaaGUCAccgccgaaaUGGCCg -3'
miRNA:   3'- aUCUACUUG-------UGGCCCgcCAGU---------ACCGG- -5'
26537 5' -55.7 NC_005357.1 + 22479 0.69 0.423095
Target:  5'- aGGcgGAACcaggggcggGCUGGGCuGGUCAUGcccGCCa -3'
miRNA:   3'- aUCuaCUUG---------UGGCCCG-CCAGUAC---CGG- -5'
26537 5' -55.7 NC_005357.1 + 1440 0.69 0.413467
Target:  5'- aAGAUGGcaaACACCuucuugacGGcGCGGUCGgcGGCCu -3'
miRNA:   3'- aUCUACU---UGUGG--------CC-CGCCAGUa-CCGG- -5'
26537 5' -55.7 NC_005357.1 + 11023 0.7 0.385411
Target:  5'- -cGAUGAacaccugcuGCACCGGGCcGUUcucGGCCg -3'
miRNA:   3'- auCUACU---------UGUGGCCCGcCAGua-CCGG- -5'
26537 5' -55.7 NC_005357.1 + 29612 0.73 0.232207
Target:  5'- cAGuUGuccAGCGCCGGGCGcUUGUGGCCg -3'
miRNA:   3'- aUCuAC---UUGUGGCCCGCcAGUACCGG- -5'
26537 5' -55.7 NC_005357.1 + 5825 0.66 0.569874
Target:  5'- gGGcAUGGcgugccgcaGCACCGuGCGGUCgaaGUGGCUa -3'
miRNA:   3'- aUC-UACU---------UGUGGCcCGCCAG---UACCGG- -5'
26537 5' -55.7 NC_005357.1 + 9693 0.67 0.526038
Target:  5'- ---uUGGugG--GGGCGGUCAUGGCg -3'
miRNA:   3'- aucuACUugUggCCCGCCAGUACCGg -5'
26537 5' -55.7 NC_005357.1 + 6205 0.69 0.432856
Target:  5'- cAGGUGAcgGCGCgCGGcuccUGGUCGUGGUCu -3'
miRNA:   3'- aUCUACU--UGUG-GCCc---GCCAGUACCGG- -5'
26537 5' -55.7 NC_005357.1 + 17740 0.73 0.25813
Target:  5'- -cGAUGGACAgcCUGGGCguGGaCGUGGCCc -3'
miRNA:   3'- auCUACUUGU--GGCCCG--CCaGUACCGG- -5'
26537 5' -55.7 NC_005357.1 + 37666 0.73 0.251435
Target:  5'- gUGGgcGAACGCCGagaacaucGCGGcCGUGGCCg -3'
miRNA:   3'- -AUCuaCUUGUGGCc-------CGCCaGUACCGG- -5'
26537 5' -55.7 NC_005357.1 + 6614 0.66 0.625782
Target:  5'- -cGAUGAcCAgCGGGCG--CGUGGCg -3'
miRNA:   3'- auCUACUuGUgGCCCGCcaGUACCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.