miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26538 5' -53 NC_005357.1 + 26956 0.69 0.579218
Target:  5'- gGCGAugcaacUGGACGGcagcuucgGCCaAGGGCGCg -3'
miRNA:   3'- gUGCUuu----AUCUGCUa-------CGGgUCCCGCG- -5'
26538 5' -53 NC_005357.1 + 15001 0.7 0.512733
Target:  5'- uGCGGccgccgGGcGCGGUGCgCCAGGcGCGCg -3'
miRNA:   3'- gUGCUuua---UC-UGCUACG-GGUCC-CGCG- -5'
26538 5' -53 NC_005357.1 + 25130 0.71 0.470187
Target:  5'- -cCGGAAUGGAUGcgcGCCCGcGGCGCc -3'
miRNA:   3'- guGCUUUAUCUGCua-CGGGUcCCGCG- -5'
26538 5' -53 NC_005357.1 + 21245 0.71 0.45983
Target:  5'- gCACGAucaacucgGGGuCGAUGCCCAGcaugucGGCGUa -3'
miRNA:   3'- -GUGCUuua-----UCU-GCUACGGGUC------CCGCG- -5'
26538 5' -53 NC_005357.1 + 7999 0.71 0.45983
Target:  5'- cCACGgcGUcGGACG-UGCCCuuGGCGCc -3'
miRNA:   3'- -GUGCuuUA-UCUGCuACGGGucCCGCG- -5'
26538 5' -53 NC_005357.1 + 36140 0.71 0.449597
Target:  5'- aAUGucGUGGGCGAccuguucggccUGCCCAGcGCGCa -3'
miRNA:   3'- gUGCuuUAUCUGCU-----------ACGGGUCcCGCG- -5'
26538 5' -53 NC_005357.1 + 31967 0.72 0.429514
Target:  5'- gCGCGAcuuccaGGGCGAcGCCaAGGGCGCc -3'
miRNA:   3'- -GUGCUuua---UCUGCUaCGGgUCCCGCG- -5'
26538 5' -53 NC_005357.1 + 9231 0.72 0.400405
Target:  5'- cCGCGAuagccagcGGUGGcCG-UGCCgAGGGCGCc -3'
miRNA:   3'- -GUGCU--------UUAUCuGCuACGGgUCCCGCG- -5'
26538 5' -53 NC_005357.1 + 13689 0.73 0.390986
Target:  5'- cCGCGc--UGGACGAUGCCaa-GGCGCu -3'
miRNA:   3'- -GUGCuuuAUCUGCUACGGgucCCGCG- -5'
26538 5' -53 NC_005357.1 + 17750 0.74 0.329225
Target:  5'- cCugGgcGUGGACGugGCCCGcggcGGGCGCg -3'
miRNA:   3'- -GugCuuUAUCUGCuaCGGGU----CCCGCG- -5'
26538 5' -53 NC_005357.1 + 22750 0.74 0.329225
Target:  5'- aGCaGAGUGGACu-UGCCCAGGGUGa -3'
miRNA:   3'- gUGcUUUAUCUGcuACGGGUCCCGCg -5'
26538 5' -53 NC_005357.1 + 33153 0.75 0.2973
Target:  5'- gCGCGAAGUGGGCGAUGgUgGaguugcggaaguGGGCGCc -3'
miRNA:   3'- -GUGCUUUAUCUGCUACgGgU------------CCCGCG- -5'
26538 5' -53 NC_005357.1 + 7112 0.75 0.2973
Target:  5'- gCACGA--UGGACugcguGAUGCCCagcgguugcauaAGGGCGCu -3'
miRNA:   3'- -GUGCUuuAUCUG-----CUACGGG------------UCCCGCG- -5'
26538 5' -53 NC_005357.1 + 8724 0.76 0.260842
Target:  5'- aCACGA---AGAUG-UGCCCGgcGGGCGCg -3'
miRNA:   3'- -GUGCUuuaUCUGCuACGGGU--CCCGCG- -5'
26538 5' -53 NC_005357.1 + 33783 0.76 0.22811
Target:  5'- aGCGAGuacGGCGcgGCCUGGGGCGUu -3'
miRNA:   3'- gUGCUUuauCUGCuaCGGGUCCCGCG- -5'
26538 5' -53 NC_005357.1 + 42247 0.77 0.221995
Target:  5'- aGCGu----GACGGUGCCCagcgacaccGGGGCGCa -3'
miRNA:   3'- gUGCuuuauCUGCUACGGG---------UCCCGCG- -5'
26538 5' -53 NC_005357.1 + 29656 0.79 0.163554
Target:  5'- gAUGAGGUAGcCGuUGCCCagcAGGGCGCg -3'
miRNA:   3'- gUGCUUUAUCuGCuACGGG---UCCCGCG- -5'
26538 5' -53 NC_005357.1 + 14052 0.79 0.15899
Target:  5'- gCGCGAAAgcccggcgcUGGGCGucguUGCCUAGGGUGCc -3'
miRNA:   3'- -GUGCUUU---------AUCUGCu---ACGGGUCCCGCG- -5'
26538 5' -53 NC_005357.1 + 13372 0.83 0.091693
Target:  5'- uCugGAAAUAGGCcAUGCCCAGcGCGCg -3'
miRNA:   3'- -GugCUUUAUCUGcUACGGGUCcCGCG- -5'
26538 5' -53 NC_005357.1 + 379 1.11 0.000844
Target:  5'- aCACGAAAUAGACGAUGCCCAGGGCGCc -3'
miRNA:   3'- -GUGCUUUAUCUGCUACGGGUCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.