miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26539 3' -59.2 NC_005357.1 + 19028 0.69 0.23744
Target:  5'- gGGUgcgGUAGCC-CUgguagcGGCCGCCggcGGCg -3'
miRNA:   3'- -UCGaa-CGUCGGuGAa-----CCGGCGGa--CCG- -5'
26539 3' -59.2 NC_005357.1 + 6771 0.69 0.250223
Target:  5'- uAGUUUGCccGCCACccUGGgaaucuaugaCCGCCUGGUc -3'
miRNA:   3'- -UCGAACGu-CGGUGa-ACC----------GGCGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 36041 0.66 0.391277
Target:  5'- cGaggGC-GCCGCggcGGCCGaCCUGGUg -3'
miRNA:   3'- uCgaaCGuCGGUGaa-CCGGC-GGACCG- -5'
26539 3' -59.2 NC_005357.1 + 18065 0.66 0.391277
Target:  5'- cGGCgcggGguGCgUGCUgGGCCGCCgaagccGGCg -3'
miRNA:   3'- -UCGaa--CguCG-GUGAaCCGGCGGa-----CCG- -5'
26539 3' -59.2 NC_005357.1 + 12870 0.66 0.373278
Target:  5'- cAGCUUGUuguagAGCCACaggcucgUGGUgucguCGCCUuuGGCg -3'
miRNA:   3'- -UCGAACG-----UCGGUGa------ACCG-----GCGGA--CCG- -5'
26539 3' -59.2 NC_005357.1 + 27435 0.66 0.364491
Target:  5'- cGCgcccgGCGGCCGCa-GGCCcugGCgCUGGUa -3'
miRNA:   3'- uCGaa---CGUCGGUGaaCCGG---CG-GACCG- -5'
26539 3' -59.2 NC_005357.1 + 16367 0.67 0.339001
Target:  5'- uGUUcUGCGGCUugUUGGUagUGCC-GGCa -3'
miRNA:   3'- uCGA-ACGUCGGugAACCG--GCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 9210 0.66 0.373278
Target:  5'- cGGCggcGCGGCgCACguucugcGGCgCGCCcGGCg -3'
miRNA:   3'- -UCGaa-CGUCG-GUGaa-----CCG-GCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 33761 0.67 0.331611
Target:  5'- cGGCgcaGCAGCCGCUgcacacagcgaguacGGCgCGgCCUGGg -3'
miRNA:   3'- -UCGaa-CGUCGGUGAa--------------CCG-GC-GGACCg -5'
26539 3' -59.2 NC_005357.1 + 13168 0.68 0.307067
Target:  5'- cGGCcagUGuCGGCCGCgcUGGgCGCCcuUGGCc -3'
miRNA:   3'- -UCGa--AC-GUCGGUGa-ACCgGCGG--ACCG- -5'
26539 3' -59.2 NC_005357.1 + 8633 0.68 0.307067
Target:  5'- cGC-UGCGGUgGCgaGGUCGCC-GGCc -3'
miRNA:   3'- uCGaACGUCGgUGaaCCGGCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 11696 0.68 0.284662
Target:  5'- ---cUGCGGCgGaCUUaGCCGCUUGGCg -3'
miRNA:   3'- ucgaACGUCGgU-GAAcCGGCGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 25744 0.68 0.270455
Target:  5'- cGGCg-GCAGCaCGCUgGGCgCGCUgcugGGCg -3'
miRNA:   3'- -UCGaaCGUCG-GUGAaCCG-GCGGa---CCG- -5'
26539 3' -59.2 NC_005357.1 + 973 1.11 0.000141
Target:  5'- cAGCUUGCAGCCACUUGGCCGCCUGGCg -3'
miRNA:   3'- -UCGAACGUCGGUGAACCGGCGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.