Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26539 | 3' | -59.2 | NC_005357.1 | + | 9385 | 0.71 | 0.166262 |
Target: 5'- uGCauugUGCAGCCACUgcaugucgcgcaGGCCGCg-GGCu -3' miRNA: 3'- uCGa---ACGUCGGUGAa-----------CCGGCGgaCCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 11138 | 0.71 | 0.171848 |
Target: 5'- gAGCaguuCGGCCuGCUgcugGGCCGCCUGcGCa -3' miRNA: 3'- -UCGaac-GUCGG-UGAa---CCGGCGGAC-CG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 21118 | 0.71 | 0.189619 |
Target: 5'- uGCUUGCugguaucgacgcuGCCcaGCUUGGCCGCCguguccgcgcccUGGUu -3' miRNA: 3'- uCGAACGu------------CGG--UGAACCGGCGG------------ACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 464 | 0.7 | 0.202347 |
Target: 5'- cAGCUUGCGGgCGCUgucgcGGUCggauGCCUcGGCa -3' miRNA: 3'- -UCGAACGUCgGUGAa----CCGG----CGGA-CCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 13439 | 0.7 | 0.213515 |
Target: 5'- cGGCagGCccGCCAgCUUGGCgGCCUcgGGCg -3' miRNA: 3'- -UCGaaCGu-CGGU-GAACCGgCGGA--CCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 41751 | 0.69 | 0.263569 |
Target: 5'- cGGCcgGC-GCCGCcguaGGCgGCCUGGUg -3' miRNA: 3'- -UCGaaCGuCGGUGaa--CCGgCGGACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 12236 | 0.68 | 0.270455 |
Target: 5'- aAGCccgGCGGCUACUucaUGGCCuucaccgaCUGGCg -3' miRNA: 3'- -UCGaa-CGUCGGUGA---ACCGGcg------GACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 26371 | 0.68 | 0.277486 |
Target: 5'- cGCgcgGCGGCCACgugcgcgaacUGGCCuacaaCUGGCa -3' miRNA: 3'- uCGaa-CGUCGGUGa---------ACCGGcg---GACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 25589 | 0.68 | 0.299452 |
Target: 5'- cGCUcgUGCAuccgaacuaugcGCCGCgugaacUGcGCCGCCUGGg -3' miRNA: 3'- uCGA--ACGU------------CGGUGa-----AC-CGGCGGACCg -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 30834 | 0.68 | 0.307067 |
Target: 5'- uGCUgcccgGCGGCCAgccGGCgGCCcugGGCg -3' miRNA: 3'- uCGAa----CGUCGGUgaaCCGgCGGa--CCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 5342 | 0.67 | 0.31483 |
Target: 5'- cAGCaugGCAucgcGCUGCgUGGCCGCCUGcaccGCg -3' miRNA: 3'- -UCGaa-CGU----CGGUGaACCGGCGGAC----CG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 40194 | 0.69 | 0.243762 |
Target: 5'- ----cGCGGCCACgc-GCCGCCUGcuGCg -3' miRNA: 3'- ucgaaCGUCGGUGaacCGGCGGAC--CG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 9490 | 0.69 | 0.23744 |
Target: 5'- ----cGCAGCCG--UGGUCGCcCUGGCc -3' miRNA: 3'- ucgaaCGUCGGUgaACCGGCG-GACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 8667 | 0.69 | 0.231256 |
Target: 5'- cGCUgugUGCAGCgGCUgcUGcGCCGCCcaGGUg -3' miRNA: 3'- uCGA---ACGUCGgUGA--AC-CGGCGGa-CCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 715 | 0.69 | 0.231256 |
Target: 5'- -uCUUGuCGGCCAC--GGCCaagucgagcGCCUGGCg -3' miRNA: 3'- ucGAAC-GUCGGUGaaCCGG---------CGGACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 28008 | 0.71 | 0.181529 |
Target: 5'- ----cGguGCCGCa-GGCgCGCCUGGCg -3' miRNA: 3'- ucgaaCguCGGUGaaCCG-GCGGACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 27580 | 0.72 | 0.15819 |
Target: 5'- cAGCgUGCGG-CGC-UGGCCGCCaacGGCa -3' miRNA: 3'- -UCGaACGUCgGUGaACCGGCGGa--CCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 14996 | 0.72 | 0.14552 |
Target: 5'- gGGCcUGCGGCCGCcgGGCgcggugCGCCaGGCg -3' miRNA: 3'- -UCGaACGUCGGUGaaCCG------GCGGaCCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 41111 | 0.74 | 0.10362 |
Target: 5'- cGCUUGuCGGCCuggUGGCCGUCgcccugGGCg -3' miRNA: 3'- uCGAAC-GUCGGugaACCGGCGGa-----CCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 14161 | 0.66 | 0.409833 |
Target: 5'- cAGCgcGCGGUCAUggugcgcaacaUGGUgaGCCUGGCg -3' miRNA: 3'- -UCGaaCGUCGGUGa----------ACCGg-CGGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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