Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 3763 | 0.66 | 0.668323 |
Target: 5'- cCGCCGCuggacguAGCcUCGGucgugccgaaagccaGCGCCUGGAAu -3' miRNA: 3'- aGUGGCG-------UCGcAGCU---------------UGUGGACCUUc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 29139 | 0.68 | 0.574008 |
Target: 5'- -gGCCGCAuuccucugccaucGCcUCGAACACCUGcAAGg -3' miRNA: 3'- agUGGCGU-------------CGcAGCUUGUGGACcUUC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 6627 | 0.67 | 0.642477 |
Target: 5'- cCGCCGcCAGCuUCGcGCGCUUGGccGg -3' miRNA: 3'- aGUGGC-GUCGcAGCuUGUGGACCuuC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 27402 | 0.67 | 0.642477 |
Target: 5'- gUCGCUcuuGUAGuCGUCGcGCGCCUGGc-- -3' miRNA: 3'- -AGUGG---CGUC-GCAGCuUGUGGACCuuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 25086 | 0.66 | 0.653729 |
Target: 5'- cCAgCGCAGCG-CGcccGGCGCCgUGGGAu -3' miRNA: 3'- aGUgGCGUCGCaGC---UUGUGG-ACCUUc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 28475 | 0.66 | 0.66496 |
Target: 5'- gUCGCCGUAGUgGUCGAGCAuCCgcucGGc-- -3' miRNA: 3'- -AGUGGCGUCG-CAGCUUGU-GGa---CCuuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 29962 | 0.66 | 0.66496 |
Target: 5'- gUCGUCGCGGCGcaCGAcgGCCUGGAu- -3' miRNA: 3'- -AGUGGCGUCGCa-GCUugUGGACCUuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 25630 | 0.66 | 0.66496 |
Target: 5'- gUCGCCaGCAGCG-CGucCACCUcGGcGAGu -3' miRNA: 3'- -AGUGG-CGUCGCaGCuuGUGGA-CC-UUC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 5023 | 0.66 | 0.66496 |
Target: 5'- aUUACCGacuacuGCGUUGAuauuCGCCUGGuuGg -3' miRNA: 3'- -AGUGGCgu----CGCAGCUu---GUGGACCuuC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 32856 | 0.68 | 0.574008 |
Target: 5'- -gGCCGCAGacgGUCGGcgccgagauugucGCGCCcgacUGGAAGg -3' miRNA: 3'- agUGGCGUCg--CAGCU-------------UGUGG----ACCUUC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 28088 | 0.68 | 0.572895 |
Target: 5'- -gGCCGCGGCGUCguauuccgucgcgguGAucguggucacgcgguACGCCUGGucGg -3' miRNA: 3'- agUGGCGUCGCAG---------------CU---------------UGUGGACCuuC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 20122 | 0.68 | 0.557374 |
Target: 5'- aCACCGU--CGUCGAAUgccacgccuucggggGCCUGGAAu -3' miRNA: 3'- aGUGGCGucGCAGCUUG---------------UGGACCUUc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 39756 | 0.76 | 0.188864 |
Target: 5'- -uGCCGUGGCugaUCGAACACCUGGgcGa -3' miRNA: 3'- agUGGCGUCGc--AGCUUGUGGACCuuC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 39599 | 0.74 | 0.267761 |
Target: 5'- gCGCCGCuGCGcguggccgCGAGCACCUGGc-- -3' miRNA: 3'- aGUGGCGuCGCa-------GCUUGUGGACCuuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 13466 | 0.71 | 0.371237 |
Target: 5'- -gGgCGCGGUGUCGGGCaugACCUGGgcGa -3' miRNA: 3'- agUgGCGUCGCAGCUUG---UGGACCuuC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 33739 | 0.71 | 0.398686 |
Target: 5'- aUCugCGCGGCG-C--ACACCUGGgcGg -3' miRNA: 3'- -AGugGCGUCGCaGcuUGUGGACCuuC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 4123 | 0.7 | 0.44721 |
Target: 5'- gCGCUGCAGCGUUGcuucccGGCGCauagUGGAAGc -3' miRNA: 3'- aGUGGCGUCGCAGC------UUGUGg---ACCUUC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 6021 | 0.7 | 0.457304 |
Target: 5'- uUCGCCG--GUGUUGAACACCUuGAAGu -3' miRNA: 3'- -AGUGGCguCGCAGCUUGUGGAcCUUC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 16437 | 0.7 | 0.471638 |
Target: 5'- aUCGCCgGCGGCGUUGAACACggcgucguagaucGGggGc -3' miRNA: 3'- -AGUGG-CGUCGCAGCUUGUGga-----------CCuuC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 19281 | 0.69 | 0.520234 |
Target: 5'- aUCGCCGUagaacAGCGUgGu-CGCCUGGGu- -3' miRNA: 3'- -AGUGGCG-----UCGCAgCuuGUGGACCUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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